Variant report

Variant	rs34981062
Chromosome Location	chr7:117479308-117479309
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	7:115861595-115870968..7:117472637-117491176	Hela-S3	cervix:
2	7:115890993-115892266..7:117472637-117491176	Hela-S3	cervix:
3	7:116434729-116454408..7:117472637-117491176	H1-hESC	embryonic stem cell:	embryo
4	7:116754962-116765597..7:117472637-117491176	Hela-S3	cervix:
5	7:117100350-117112126..7:117472637-117491176	Hela-S3	cervix:
6	7:116728195-116740907..7:117472637-117491176	Hela-S3	cervix:
7	7:116307511-116321259..7:117472637-117491176	Hela-S3	cervix:
8	7:116849860-116864942..7:117472637-117491176	Hela-S3	cervix:

Variant related genes	Relation type
ENSG00000135269	Chromatin interaction
ENSG00000226367	Chromatin interaction
ENSG00000001626	Chromatin interaction
ENSG00000198898	Chromatin interaction
ENSG00000105976	Chromatin interaction
ENSG00000004866	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12531917	1.00[AMR][1000 genomes]
rs28377301	1.00[AMR][1000 genomes]
rs28704799	1.00[AMR][1000 genomes]
rs34021890	1.00[AMR][1000 genomes]
rs34181727	1.00[AMR][1000 genomes]
rs34200018	1.00[AMR][1000 genomes]
rs34338908	1.00[AMR][1000 genomes]
rs34339278	1.00[AMR][1000 genomes]
rs34359747	1.00[AMR][1000 genomes]
rs34400048	1.00[AMR][1000 genomes]
rs34466297	1.00[AMR][1000 genomes]
rs34470165	1.00[AMR][1000 genomes]
rs34477331	1.00[AMR][1000 genomes]
rs34511406	1.00[AMR][1000 genomes]
rs34540855	1.00[AMR][1000 genomes]
rs34768465	1.00[AMR][1000 genomes]
rs34771810	1.00[AMR][1000 genomes]
rs34973305	1.00[AMR][1000 genomes]
rs34983001	1.00[AMR][1000 genomes]
rs35194808	1.00[AMR][1000 genomes]
rs35231864	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35324275	1.00[AMR][1000 genomes]
rs35337904	1.00[AMR][1000 genomes]
rs35346641	1.00[AMR][1000 genomes]
rs35586890	1.00[AMR][1000 genomes]
rs35769815	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869971	chr7:117420583-118274149	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117469000-117503600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr7:117469400-117503800	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr7:117469600-117511800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr7:117469800-117484000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr7:117469800-117484000	Weak transcription	Aorta	Aorta
6	chr7:117469800-117493800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr7:117470800-117493800	Weak transcription	Fetal Brain Male	brain
8	chr7:117470800-117495200	Weak transcription	Brain Germinal Matrix	brain
9	chr7:117471200-117483800	Weak transcription	Fetal Brain Female	brain
10	chr7:117471600-117483200	Weak transcription	Fetal Lung	lung
11	chr7:117474000-117484000	Weak transcription	NHLF	lung
12	chr7:117475600-117479400	Weak transcription	Primary hematopoietic stem cells	blood
13	chr7:117475600-117484000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr7:117475600-117484000	Weak transcription	Adipose Nuclei	Adipose
15	chr7:117475600-117496000	Weak transcription	Brain Angular Gyrus	brain
16	chr7:117475600-117496600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr7:117475600-117506600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr7:117475800-117482000	Weak transcription	Brain Hippocampus Middle	brain
19	chr7:117475800-117484000	Weak transcription	Fetal Kidney	kidney
20	chr7:117475800-117489200	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr7:117476000-117480400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr7:117476000-117484000	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr7:117476000-117484200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr7:117476000-117489200	Weak transcription	Brain Substantia Nigra	brain
25	chr7:117476000-117501000	Weak transcription	Fetal Stomach	stomach
26	chr7:117476200-117484600	Weak transcription	Brain Anterior Caudate	brain
27	chr7:117476200-117489400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr7:117476200-117489600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr7:117476200-117497200	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr7:117477000-117489600	Weak transcription	HUES48 Cell Line	embryonic stem cell
31	chr7:117478400-117483800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr7:117478400-117489400	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr7:117478400-117502600	Weak transcription	Pancreas	Pancrea
34	chr7:117478600-117479600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr7:117479000-117480800	Enhancers	Primary hematopoietic stem cells short term culture	blood
36	chr7:117479200-117479800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr7:117479200-117480000	Enhancers	GM12878-XiMat	blood
38	chr7:117479200-117482000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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