Variant report
| Variant | rs28377301 |
|---|---|
| Chromosome Location | chr7:117568233-117568234 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000001626 | Chromatin interaction |
| ENSG00000004866 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs10258355 | 1.00[AMR][1000 genomes] |
| rs12333891 | 1.00[AMR][1000 genomes] |
| rs12531917 | 1.00[AMR][1000 genomes] |
| rs17140765 | 1.00[EUR][1000 genomes] |
| rs28704799 | 1.00[AMR][1000 genomes] |
| rs34021890 | 1.00[AMR][1000 genomes] |
| rs34200018 | 1.00[AMR][1000 genomes] |
| rs34312798 | 1.00[EUR][1000 genomes] |
| rs34329593 | 1.00[EUR][1000 genomes] |
| rs34338908 | 1.00[AMR][1000 genomes] |
| rs34359747 | 1.00[AMR][1000 genomes] |
| rs34470165 | 1.00[AMR][1000 genomes] |
| rs34540855 | 1.00[AMR][1000 genomes] |
| rs34768465 | 1.00[AMR][1000 genomes] |
| rs34981062 | 1.00[AMR][1000 genomes] |
| rs35231864 | 1.00[AMR][1000 genomes] |
| rs35324275 | 1.00[AMR][1000 genomes] |
| rs35586890 | 1.00[AMR][1000 genomes] |
| rs35769815 | 1.00[AMR][1000 genomes] |
| rs36059768 | 1.00[EUR][1000 genomes] |
| rs6961987 | 1.00[EUR][1000 genomes] |
| rs73481627 | 1.00[EUR][1000 genomes] |
| rs73481632 | 1.00[EUR][1000 genomes] |
| rs73481655 | 1.00[EUR][1000 genomes] |
| rs73716917 | 1.00[AMR][1000 genomes] |
| rs73716918 | 1.00[AMR][1000 genomes] |
| rs73718534 | 1.00[AMR][1000 genomes] |
| rs981888 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv869971 | chr7:117420583-118274149 | Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 40 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
