Variant report
| Variant | rs10258355 |
|---|---|
| Chromosome Location | chr7:117707825-117707826 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:197167660..197168424-chr7:117707343..117708112,2 | MCF-7 | breast: | |
| 2 | chr7:117703291..117706183-chr7:117706701..117709440,2 | MCF-7 | breast: | |
| 3 | chr7:117701125..117702689-chr7:117705932..117707873,2 | K562 | blood: | |
| 4 | chr7:117469182..117471688-chr7:117706530..117708485,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10224726 | 1.00[AMR][1000 genomes] |
| rs10231048 | 1.00[AMR][1000 genomes] |
| rs10237829 | 1.00[AMR][1000 genomes] |
| rs10265880 | 1.00[AMR][1000 genomes] |
| rs10269886 | 1.00[AMR][1000 genomes] |
| rs10274083 | 1.00[AMR][1000 genomes] |
| rs10275073 | 1.00[AMR][1000 genomes] |
| rs10276584 | 1.00[AMR][1000 genomes] |
| rs10480724 | 0.85[YRI][hapmap];0.85[AFR][1000 genomes] |
| rs10480726 | 1.00[AMR][1000 genomes] |
| rs1055882 | 1.00[AMR][1000 genomes] |
| rs12333891 | 1.00[AMR][1000 genomes] |
| rs12531917 | 1.00[AMR][1000 genomes] |
| rs12535557 | 1.00[AMR][1000 genomes] |
| rs28377301 | 1.00[AMR][1000 genomes] |
| rs28437222 | 1.00[AMR][1000 genomes] |
| rs28704799 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs35231864 | 1.00[AMR][1000 genomes] |
| rs35769815 | 1.00[AMR][1000 genomes] |
| rs35949266 | 1.00[AMR][1000 genomes] |
| rs73716905 | 0.95[AFR][1000 genomes] |
| rs73716917 | 1.00[AMR][1000 genomes] |
| rs73716918 | 1.00[AMR][1000 genomes] |
| rs73716925 | 1.00[AMR][1000 genomes] |
| rs73718534 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv869971 | chr7:117420583-118274149 | Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 40 gene(s) | inside rSNPs | diseases |
| 2 | nsv1018914 | chr7:117707746-117722120 | Weak transcription Enhancers Flanking Active TSS Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv1026324 | chr7:117707746-117734305 | Enhancers Weak transcription Active TSS Flanking Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv1019337 | chr7:117707746-117739400 | Enhancers Weak transcription Flanking Active TSS Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:117707000-117708800 | Enhancers | Breast Myoepithelial Primary Cells | Breast |
| 2 | chr7:117707600-117708400 | Enhancers | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
