Variant report

Variant	rs10274083
Chromosome Location	chr7:117827536-117827537
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:89768960..89770778-chr7:117827022..117828704,2	MCF-7	breast:
2	chr7:117825257..117827852-chr7:118309009..118311377,2	K562	blood:

Variant related genes	Relation type
ENSG00000176055	Chromatin interaction
ENSG00000113356	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10224726	1.00[AMR][1000 genomes]
rs10231048	1.00[AMR][1000 genomes]
rs10237829	1.00[AMR][1000 genomes]
rs10258355	1.00[AMR][1000 genomes]
rs10265880	1.00[AMR][1000 genomes]
rs10269886	0.82[YRI][hapmap];1.00[AMR][1000 genomes]
rs10275073	1.00[AMR][1000 genomes]
rs10276584	1.00[AMR][1000 genomes]
rs10480726	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1055882	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12333891	1.00[AMR][1000 genomes]
rs12531917	1.00[AMR][1000 genomes]
rs12535557	1.00[AMR][1000 genomes]
rs28437222	1.00[AMR][1000 genomes]
rs28704799	1.00[AMR][1000 genomes]
rs35949266	1.00[AMR][1000 genomes]
rs7357242	1.00[MKK][hapmap]
rs73716917	1.00[AMR][1000 genomes]
rs73716918	1.00[AMR][1000 genomes]
rs73716925	1.00[AMR][1000 genomes]
rs73716946	0.83[AFR][1000 genomes]
rs73718534	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869971	chr7:117420583-118274149	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv889088	chr7:117744660-117913648	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10274083	NHSL1	trans	lymphoblastoid	seeQTL

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117824800-117829000	Weak transcription	Lung	lung
2	chr7:117824800-117829200	Weak transcription	Gastric	stomach
3	chr7:117824800-117832600	Weak transcription	Pancreas	Pancrea
4	chr7:117825000-117827800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr7:117825000-117830600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr7:117825000-117834000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr7:117825000-117842200	Weak transcription	Aorta	Aorta
8	chr7:117825200-117828000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr7:117825200-117828400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr7:117825200-117830600	Weak transcription	HSMMtube	muscle
11	chr7:117825200-117834000	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr7:117825400-117827800	Enhancers	Primary T cells from cord blood	blood
13	chr7:117825400-117828000	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr7:117825600-117827600	Weak transcription	Fetal Muscle Trunk	muscle
15	chr7:117825600-117827600	Weak transcription	Fetal Muscle Leg	muscle
16	chr7:117825600-117828200	Transcr. at gene 5' and 3'	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr7:117825600-117828400	Weak transcription	Colonic Mucosa	Colon
18	chr7:117825600-117829000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr7:117825600-117829000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr7:117825600-117829000	Weak transcription	Esophagus	oesophagus
21	chr7:117825600-117832000	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr7:117825600-117834000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr7:117825600-117835000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr7:117825600-117835600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr7:117825600-117837200	Weak transcription	Left Ventricle	heart
26	chr7:117825800-117827600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr7:117825800-117827600	Weak transcription	Primary T cells fromperipheralblood	blood
28	chr7:117825800-117827600	Weak transcription	Fetal Intestine Large	intestine
29	chr7:117825800-117827800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr7:117825800-117827800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr7:117825800-117827800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
32	chr7:117825800-117827800	Weak transcription	Brain Substantia Nigra	brain
33	chr7:117825800-117827800	Weak transcription	Rectal Smooth Muscle	rectum
34	chr7:117825800-117829000	Weak transcription	Fetal Intestine Small	intestine
35	chr7:117825800-117829000	Weak transcription	Spleen	Spleen
36	chr7:117825800-117831000	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr7:117825800-117831200	Weak transcription	Brain Anterior Caudate	brain
38	chr7:117825800-117834000	Weak transcription	Brain Cingulate Gyrus	brain
39	chr7:117825800-117834600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr7:117825800-117836600	Weak transcription	Psoas Muscle	Psoas
41	chr7:117825800-117842600	Weak transcription	Brain Hippocampus Middle	brain
42	chr7:117826000-117827600	Enhancers	Primary T helper cells PMA-I stimulated	--
43	chr7:117826000-117827600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr7:117826000-117827600	Weak transcription	Fetal Stomach	stomach
45	chr7:117826000-117827600	Weak transcription	Skeletal Muscle Female	skeletal muscle
46	chr7:117826000-117827600	Weak transcription	Stomach Smooth Muscle	stomach
47	chr7:117826000-117827600	Active TSS	GM12878-XiMat	blood
48	chr7:117826000-117827800	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr7:117826000-117827800	Weak transcription	HMEC	breast
50	chr7:117826000-117828000	Weak transcription	Primary hematopoietic stem cells	blood

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