Variant report
| Variant | rs10265880 |
|---|---|
| Chromosome Location | chr7:117810212-117810213 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:7)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:7 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:117810000..117816028-chr7:117818998..117827280,18 | MCF-7 | breast: | |
| 2 | chr7:117807631..117809335-chr7:117809993..117811575,2 | K562 | blood: | |
| 3 | chr7:117803601..117805176-chr7:117809877..117811629,2 | K562 | blood: | |
| 4 | chr7:117809348..117812176-chr7:117812689..117815376,2 | K562 | blood: | |
| 5 | chr7:117808352..117810349-chr7:117817337..117819937,2 | K562 | blood: | |
| 6 | chr7:117806265..117809335-chr7:117809993..117813249,4 | K562 | blood: | |
| 7 | chr7:117712368..117714934-chr7:117809130..117811902,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000128534 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs10224726 | 1.00[AMR][1000 genomes] |
| rs10231048 | 1.00[AMR][1000 genomes] |
| rs10237829 | 1.00[AMR][1000 genomes] |
| rs10258355 | 1.00[AMR][1000 genomes] |
| rs10269886 | 1.00[AMR][1000 genomes] |
| rs10274083 | 1.00[AMR][1000 genomes] |
| rs10275073 | 1.00[AMR][1000 genomes] |
| rs10276584 | 1.00[AMR][1000 genomes] |
| rs10480726 | 1.00[AMR][1000 genomes] |
| rs1055882 | 1.00[AMR][1000 genomes] |
| rs12333891 | 1.00[AMR][1000 genomes] |
| rs12531917 | 1.00[AMR][1000 genomes] |
| rs12535557 | 1.00[AMR][1000 genomes] |
| rs28437222 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28704799 | 1.00[AMR][1000 genomes] |
| rs35949266 | 1.00[AMR][1000 genomes] |
| rs73716917 | 1.00[AMR][1000 genomes] |
| rs73716918 | 1.00[AMR][1000 genomes] |
| rs73716925 | 1.00[AMR][1000 genomes] |
| rs73718534 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv869971 | chr7:117420583-118274149 | Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 40 gene(s) | inside rSNPs | diseases |
| 2 | nsv889088 | chr7:117744660-117913648 | Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 25 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:117791200-117815800 | Weak transcription | Psoas Muscle | Psoas |
