Variant report

Variant	rs10480726
Chromosome Location	chr7:117840921-117840922
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10224726	1.00[AMR][1000 genomes]
rs10231048	1.00[AMR][1000 genomes]
rs10237829	1.00[AMR][1000 genomes]
rs10258355	1.00[AMR][1000 genomes]
rs10265880	1.00[AMR][1000 genomes]
rs10269886	1.00[AMR][1000 genomes]
rs10274083	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10275073	1.00[AMR][1000 genomes]
rs10276584	1.00[AMR][1000 genomes]
rs1055882	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12333891	1.00[AMR][1000 genomes]
rs12531917	1.00[AMR][1000 genomes]
rs12535557	1.00[AMR][1000 genomes]
rs28437222	1.00[AMR][1000 genomes]
rs28704799	1.00[AMR][1000 genomes]
rs35949266	1.00[AMR][1000 genomes]
rs73716917	1.00[AMR][1000 genomes]
rs73716918	1.00[AMR][1000 genomes]
rs73716925	1.00[AMR][1000 genomes]
rs73718534	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869971	chr7:117420583-118274149	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv889088	chr7:117744660-117913648	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117825000-117842200	Weak transcription	Aorta	Aorta
2	chr7:117825800-117842600	Weak transcription	Brain Hippocampus Middle	brain
3	chr7:117830400-117842400	Weak transcription	Fetal Lung	lung
4	chr7:117831200-117842400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr7:117832800-117842200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr7:117833000-117854000	Weak transcription	HSMM	muscle
7	chr7:117833400-117842200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr7:117833600-117854000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr7:117834000-117842000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr7:117834400-117843400	Weak transcription	Fetal Thymus	thymus
11	chr7:117839400-117843600	Weak transcription	Primary B cells from cord blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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