Variant report

No.	Distal block	Cell Line	Cell type
1	chr7:117810000..117816028-chr7:117818998..117827280,18	MCF-7	breast:
2	chr7:117807631..117809335-chr7:117809993..117811575,2	K562	blood:
3	chr7:117803601..117805176-chr7:117809877..117811629,2	K562	blood:
4	chr7:117809348..117812176-chr7:117812689..117815376,2	K562	blood:
5	chr7:117800817..117802687-chr7:117810955..117814071,3	MCF-7	breast:
6	chr7:117806265..117809335-chr7:117809993..117813249,4	K562	blood:
7	chr7:117712368..117714934-chr7:117809130..117811902,2	K562	blood:

Variant related genes	Relation type
ENSG00000128534	Chromatin interaction

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10224726	0.85[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10231048	1.00[AMR][1000 genomes]
rs10237829	1.00[AMR][1000 genomes]
rs10258355	1.00[AMR][1000 genomes]
rs10265880	1.00[AMR][1000 genomes]
rs10274083	0.82[YRI][hapmap];1.00[AMR][1000 genomes]
rs10275073	1.00[AMR][1000 genomes]
rs10276584	1.00[AMR][1000 genomes]
rs10480726	1.00[AMR][1000 genomes]
rs1055882	1.00[AMR][1000 genomes]
rs12333891	1.00[AMR][1000 genomes]
rs12531917	1.00[AMR][1000 genomes]
rs12535557	0.83[LWK][hapmap];1.00[AMR][1000 genomes]
rs28437222	1.00[AMR][1000 genomes]
rs28704799	1.00[AMR][1000 genomes]
rs35949266	1.00[AMR][1000 genomes]
rs73716917	1.00[AMR][1000 genomes]
rs73716918	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73716925	1.00[AMR][1000 genomes]
rs73718534	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869971	chr7:117420583-118274149	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv889088	chr7:117744660-117913648	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117791200-117815800	Weak transcription	Psoas Muscle	Psoas
2	chr7:117810600-117811600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:117810800-117811800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

Quick Search: