Variant report

Variant	rs12333891
Chromosome Location	chr7:117773021-117773022
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10224726	1.00[AMR][1000 genomes]
rs10231048	1.00[AMR][1000 genomes]
rs10237829	1.00[AMR][1000 genomes]
rs10258355	1.00[AMR][1000 genomes]
rs10265880	1.00[AMR][1000 genomes]
rs10269886	1.00[AMR][1000 genomes]
rs10274083	1.00[AMR][1000 genomes]
rs10275073	1.00[AMR][1000 genomes]
rs10276584	1.00[AMR][1000 genomes]
rs10480726	1.00[AMR][1000 genomes]
rs1055882	1.00[AMR][1000 genomes]
rs12531917	1.00[AMR][1000 genomes]
rs12535557	1.00[AMR][1000 genomes]
rs28377301	1.00[AMR][1000 genomes]
rs28437222	1.00[AMR][1000 genomes]
rs28704799	1.00[AMR][1000 genomes]
rs35949266	1.00[AMR][1000 genomes]
rs73716917	1.00[AMR][1000 genomes]
rs73716918	1.00[AMR][1000 genomes]
rs73716925	1.00[AMR][1000 genomes]
rs73718534	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869971	chr7:117420583-118274149	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	esv2752146	chr7:117739049-117792049	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1016264	chr7:117739146-117792988	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2761358	chr7:117739158-117793000	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv608260	chr7:117739400-117792838	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1028064	chr7:117740164-117792988	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv889088	chr7:117744660-117913648	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
8	esv3428352	chr7:117754050-117783524	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	esv33380	chr7:117768471-117793477	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117768800-117773400	Weak transcription	Fetal Brain Male	brain
2	chr7:117773000-117773600	Enhancers	Fetal Brain Female	brain

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