Variant report

Variant	rs10237829
Chromosome Location	chr7:117822403-117822404
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:7)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:7 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr7:117820845-117829160	K562	blood:	n/a	n/a
2	POLR2A	chr7:117822373-117822832	HepG2	liver:	n/a	n/a
3	POLR2A	chr7:117822340-117822884	GM12878	blood:	n/a	n/a
4	POLR2A	chr7:117822010-117826055	GM12891	blood:	n/a	n/a
5	POLR2A	chr7:117822283-117822853	K562	blood:	n/a	n/a
6	POLR2A	chr7:117822224-117822873	GM12878	blood:	n/a	n/a
7	POLR2A	chr7:117822305-117822568	MCF-7	breast:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:117388690..117390929-chr7:117821238..117823244,2	MCF-7	breast:
2	chr5:149864249..149866469-chr7:117821128..117824020,2	MCF-7	breast:
3	chr7:117821578..117823325-chr7:117847731..117849389,2	K562	blood:
4	chr7:117819950..117822921-chr7:117839591..117842038,2	MCF-7	breast:
5	chr7:117822159..117825807-chr7:117854196..117858736,4	K562	blood:
6	chr7:117821797..117823895-chr7:117873522..117875796,2	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CTTNBP2-3	chr7:117821706-117824013	NONHSAT122959

No data

Variant related genes	Relation type
NAA38	TF binding region
ENSG00000070614	Chromatin interaction
ENSG00000106013	Chromatin interaction
ENSG00000254333	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10224726	1.00[AMR][1000 genomes]
rs10231048	1.00[AMR][1000 genomes]
rs10258355	1.00[AMR][1000 genomes]
rs10265880	1.00[AMR][1000 genomes]
rs10269886	1.00[AMR][1000 genomes]
rs10274083	1.00[AMR][1000 genomes]
rs10275073	1.00[AMR][1000 genomes]
rs10276584	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10480724	0.83[YRI][hapmap]
rs10480726	1.00[AMR][1000 genomes]
rs1055882	1.00[AMR][1000 genomes]
rs12333891	1.00[AMR][1000 genomes]
rs12531917	1.00[AMR][1000 genomes]
rs12535557	1.00[AMR][1000 genomes]
rs28437222	1.00[AMR][1000 genomes]
rs28550410	0.89[AFR][1000 genomes]
rs28704799	1.00[AMR][1000 genomes]
rs35949266	1.00[AMR][1000 genomes]
rs73716917	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73716918	1.00[AMR][1000 genomes]
rs73716925	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73718534	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869971	chr7:117420583-118274149	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv889088	chr7:117744660-117913648	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117816000-117822600	Weak transcription	NHEK	skin
2	chr7:117816200-117822800	Weak transcription	Fetal Heart	heart
3	chr7:117816400-117822800	Weak transcription	Primary B cells from cord blood	blood
4	chr7:117818800-117822800	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr7:117819200-117822800	Weak transcription	K562	blood
6	chr7:117820600-117822800	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr7:117820800-117823400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr7:117821600-117822600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr7:117822000-117822600	Enhancers	Fetal Kidney	kidney
10	chr7:117822200-117822800	Enhancers	Dnd41	blood
11	chr7:117822400-117822600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr7:117822400-117822600	Flanking Active TSS	Fetal Intestine Small	intestine
13	chr7:117822400-117822600	Enhancers	Lung	lung
14	chr7:117822400-117822600	Enhancers	Stomach Mucosa	stomach
15	chr7:117822400-117823000	Active TSS	Liver	Liver
16	chr7:117822400-117823000	Active TSS	Duodenum Mucosa	Duodenum
17	chr7:117822400-117823000	Enhancers	Pancreas	Pancrea
18	chr7:117822400-117823200	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr7:117822400-117823200	Enhancers	Primary B cells from peripheral blood	blood
20	chr7:117822400-117823200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr7:117822400-117823200	Active TSS	Rectal Mucosa Donor 29	rectum
22	chr7:117822400-117824800	Active TSS	Gastric	stomach
23	chr7:117822400-117825000	Active TSS	Fetal Intestine Large	intestine
24	chr7:117822400-117825600	Active TSS	Pancreatic Islets	Pancreatic Islet

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