Variant report

Variant	rs12531917
Chromosome Location	chr7:117690822-117690823
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10224726	1.00[AMR][1000 genomes]
rs10231048	1.00[AMR][1000 genomes]
rs10237829	1.00[AMR][1000 genomes]
rs10258355	1.00[AMR][1000 genomes]
rs10265880	1.00[AMR][1000 genomes]
rs10269886	1.00[AMR][1000 genomes]
rs10274083	1.00[AMR][1000 genomes]
rs10275073	1.00[AMR][1000 genomes]
rs10276584	1.00[AMR][1000 genomes]
rs10480726	1.00[AMR][1000 genomes]
rs1055882	1.00[AMR][1000 genomes]
rs12333891	1.00[AMR][1000 genomes]
rs12535557	1.00[AMR][1000 genomes]
rs28377301	1.00[AMR][1000 genomes]
rs28437222	1.00[AMR][1000 genomes]
rs28704799	1.00[AMR][1000 genomes]
rs34470165	1.00[AMR][1000 genomes]
rs34768465	1.00[AMR][1000 genomes]
rs34981062	1.00[AMR][1000 genomes]
rs35231864	1.00[AMR][1000 genomes]
rs35769815	1.00[AMR][1000 genomes]
rs35949266	1.00[AMR][1000 genomes]
rs73716917	1.00[AMR][1000 genomes]
rs73716918	1.00[AMR][1000 genomes]
rs73716925	1.00[AMR][1000 genomes]
rs73718534	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869971	chr7:117420583-118274149	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117683200-117691600	Weak transcription	Fetal Brain Male	brain
2	chr7:117683200-117692000	Weak transcription	Fetal Brain Female	brain
3	chr7:117687800-117692000	Weak transcription	Brain Germinal Matrix	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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