Variant report

Variant	rs35004053
Chromosome Location	chr15:72106453-72106454
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:72097461..72102477-chr15:72104726..72109263,4	MCF-7	breast:
2	chr15:71265292..71267495-chr15:72104679..72106559,2	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12441470	0.80[AFR][1000 genomes]
rs12441567	0.80[AFR][1000 genomes]
rs12441622	0.80[AFR][1000 genomes]
rs7162931	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7168999	0.90[AFR][1000 genomes]
rs7170011	0.84[AFR][1000 genomes]
rs7172655	1.00[AMR][1000 genomes]
rs7177067	1.00[AMR][1000 genomes]
rs7178876	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8023558	0.90[AFR][1000 genomes]
rs8031827	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8032670	0.83[AFR][1000 genomes]
rs8032883	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8039332	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904334	chr15:71737376-72177659	Strong transcription Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1036938	chr15:71948106-72272855	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	esv3331306	chr15:72049818-72427559	Strong transcription ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	esv3433206	chr15:72049838-72427529	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	nsv827383	chr15:72100044-72107239	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72100400-72112000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr15:72100600-72111000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr15:72100600-72113800	Weak transcription	Fetal Lung	lung
4	chr15:72100800-72111400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr15:72101200-72112600	Weak transcription	Right Atrium	heart
6	chr15:72103000-72107400	Weak transcription	Fetal Brain Female	brain
7	chr15:72103400-72114000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr15:72104000-72106800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr15:72104600-72107200	Strong transcription	Fetal Stomach	stomach
10	chr15:72104800-72109800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr15:72105600-72106600	Flanking Active TSS	Fetal Muscle Leg	muscle
12	chr15:72105600-72112400	Weak transcription	HSMMtube	muscle
13	chr15:72105800-72107400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr15:72105800-72109800	Weak transcription	Lung	lung
15	chr15:72106000-72106800	Weak transcription	Fetal Heart	heart
16	chr15:72106000-72114200	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr15:72106200-72113800	Weak transcription	Stomach Smooth Muscle	stomach
18	chr15:72106400-72107200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr15:72106400-72107600	Enhancers	Fetal Muscle Trunk	muscle
20	chr15:72106400-72110800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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