Variant report

Variant	rs7178876
Chromosome Location	chr15:72323493-72323494
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:72322441..72324750-chr15:72328303..72329981,2	MCF-7	breast:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11072343	0.93[AFR][1000 genomes]
rs12440204	0.87[AFR][1000 genomes]
rs12440299	0.87[AFR][1000 genomes]
rs12441246	0.87[AFR][1000 genomes]
rs12441470	1.00[AFR][1000 genomes]
rs12441567	1.00[AFR][1000 genomes]
rs12441622	1.00[AFR][1000 genomes]
rs12443127	0.97[AFR][1000 genomes]
rs12592615	0.87[AFR][1000 genomes]
rs12592858	0.87[AFR][1000 genomes]
rs12592932	0.87[AFR][1000 genomes]
rs12592969	0.87[AFR][1000 genomes]
rs12593946	1.00[AFR][1000 genomes]
rs16956599	0.87[AFR][1000 genomes]
rs34625473	0.87[AFR][1000 genomes]
rs35004053	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35773391	0.86[AFR][1000 genomes]
rs3809505	0.87[AFR][1000 genomes]
rs7162931	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7168999	0.83[AFR][1000 genomes]
rs7171446	0.87[AFR][1000 genomes]
rs7172655	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7175907	0.87[AFR][1000 genomes]
rs7177067	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7178613	0.87[AFR][1000 genomes]
rs8023558	0.83[AFR][1000 genomes]
rs8029218	0.84[AFR][1000 genomes]
rs8031827	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8032670	0.90[AFR][1000 genomes]
rs8032883	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8039245	0.93[AFR][1000 genomes]
rs8039332	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3331306	chr15:72049818-72427559	Strong transcription ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	esv3433206	chr15:72049838-72427529	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv516871	chr15:72126034-72325595	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv1042740	chr15:72128799-72482239	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
5	nsv542426	chr15:72128799-72482239	Flanking Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
6	nsv904336	chr15:72145937-72329906	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
7	nsv457198	chr15:72203517-72325595	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv569912	chr15:72203517-72325595	Strong transcription Genic enhancers Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv457200	chr15:72261385-72325595	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv569914	chr15:72261385-72325595	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv431395	chr15:72266174-72701777	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
12	nsv569916	chr15:72268986-72325595	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	nsv457201	chr15:72284647-72329906	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv569917	chr15:72284647-72329906	ZNF genes & repeats Enhancers Weak transcription Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
15	nsv833051	chr15:72315471-72508429	Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72226800-72343600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
2	chr15:72227800-72326200	Weak transcription	Fetal Brain Male	brain
3	chr15:72261000-72326200	Weak transcription	NH-A	brain
4	chr15:72277200-72325800	Weak transcription	Fetal Heart	heart
5	chr15:72280200-72338800	Weak transcription	Hela-S3	cervix
6	chr15:72282000-72341800	Weak transcription	Brain Angular Gyrus	brain
7	chr15:72282200-72337800	Weak transcription	Esophagus	oesophagus
8	chr15:72282200-72338800	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr15:72282400-72325800	Weak transcription	Rectal Smooth Muscle	rectum
10	chr15:72282400-72326200	Weak transcription	Fetal Brain Female	brain
11	chr15:72282400-72329000	Weak transcription	Brain Germinal Matrix	brain
12	chr15:72282600-72332000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr15:72282800-72325800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr15:72282800-72347000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr15:72282800-72349800	Weak transcription	Brain Hippocampus Middle	brain
16	chr15:72283600-72329600	Weak transcription	Duodenum Mucosa	Duodenum
17	chr15:72284200-72326400	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr15:72289200-72337800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr15:72291000-72325800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr15:72292200-72338200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr15:72292400-72326000	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr15:72295400-72337800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr15:72298400-72344000	Weak transcription	Spleen	Spleen
24	chr15:72298800-72325400	Weak transcription	Left Ventricle	heart
25	chr15:72299400-72325600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr15:72299400-72326000	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr15:72299400-72329000	Weak transcription	Primary monocytes fromperipheralblood	blood
28	chr15:72299600-72329600	Weak transcription	Primary B cells from cord blood	blood
29	chr15:72300000-72326000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr15:72300000-72326400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr15:72300000-72329200	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr15:72300000-72338000	Weak transcription	Stomach Smooth Muscle	stomach
33	chr15:72300000-72351000	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr15:72300200-72341800	Weak transcription	Brain Substantia Nigra	brain
35	chr15:72300400-72338200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr15:72300600-72338000	Weak transcription	Liver	Liver
37	chr15:72301000-72332200	Weak transcription	Monocytes-CD14+_RO01746	blood
38	chr15:72301000-72341800	Weak transcription	Brain Anterior Caudate	brain
39	chr15:72301000-72361200	Weak transcription	Rectal Mucosa Donor 29	rectum
40	chr15:72301600-72325800	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr15:72301800-72329000	Weak transcription	Primary T helper cells PMA-I stimulated	--
42	chr15:72302000-72329600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr15:72302000-72329600	Weak transcription	Primary B cells from peripheral blood	blood
44	chr15:72302200-72349400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr15:72302800-72337800	Weak transcription	HSMM	muscle
46	chr15:72303200-72326200	Weak transcription	NHDF-Ad	bronchial
47	chr15:72307200-72325400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
48	chr15:72308000-72329400	Weak transcription	GM12878-XiMat	blood
49	chr15:72308000-72335200	Weak transcription	Aorta	Aorta
50	chr15:72308400-72332400	Weak transcription	Ovary	ovary

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