Variant report

Variant	rs7162931
Chromosome Location	chr15:72193757-72193758
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11072343	0.80[AFR][1000 genomes]
rs12441470	0.87[AFR][1000 genomes]
rs12441567	0.87[AFR][1000 genomes]
rs12441622	0.87[AFR][1000 genomes]
rs12443127	0.83[AFR][1000 genomes]
rs12593946	0.87[AFR][1000 genomes]
rs35004053	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7168999	1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs7170011	0.90[AFR][1000 genomes]
rs7172655	1.00[AMR][1000 genomes]
rs7177067	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7178876	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8023558	0.97[AFR][1000 genomes]
rs8031827	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8032670	0.90[AFR][1000 genomes]
rs8032883	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8039245	1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs8039332	0.97[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036938	chr15:71948106-72272855	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	esv3331306	chr15:72049818-72427559	Strong transcription ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	esv3433206	chr15:72049838-72427529	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	nsv569906	chr15:72126034-72218036	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv516871	chr15:72126034-72325595	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
6	nsv1042740	chr15:72128799-72482239	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
7	nsv542426	chr15:72128799-72482239	Flanking Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
8	nsv904336	chr15:72145937-72329906	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
9	nsv569907	chr15:72154000-72215065	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
10	nsv569908	chr15:72154000-72218036	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
11	nsv457195	chr15:72177659-72250741	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
12	nsv569909	chr15:72177659-72250741	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72122400-72195000	Weak transcription	NHEK	skin
2	chr15:72122600-72195800	Weak transcription	Gastric	stomach
3	chr15:72142600-72199200	Weak transcription	Hela-S3	cervix
4	chr15:72144600-72223400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr15:72161000-72211000	Weak transcription	Small Intestine	intestine
6	chr15:72164000-72218400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr15:72167000-72197800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr15:72170200-72194000	Weak transcription	Fetal Intestine Small	intestine
9	chr15:72173000-72200600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr15:72178200-72193800	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr15:72178400-72195000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr15:72178800-72195000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr15:72185600-72198600	Weak transcription	A549	lung
14	chr15:72189200-72198000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
15	chr15:72189400-72193800	Strong transcription	Fetal Lung	lung
16	chr15:72189400-72194000	Strong transcription	Fetal Muscle Leg	muscle
17	chr15:72189400-72194000	Strong transcription	Skeletal Muscle Female	skeletal muscle
18	chr15:72189400-72194000	Strong transcription	HSMM	muscle
19	chr15:72189400-72194200	Strong transcription	Fetal Brain Female	brain
20	chr15:72189400-72194600	Strong transcription	Duodenum Smooth Muscle	Duodenum
21	chr15:72189400-72194600	Strong transcription	Fetal Muscle Trunk	muscle
22	chr15:72189400-72195000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr15:72189400-72195200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr15:72189400-72195400	Weak transcription	HepG2	liver
25	chr15:72189400-72196000	Strong transcription	NHDF-Ad	bronchial
26	chr15:72189400-72196800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr15:72189400-72196800	Strong transcription	Stomach Smooth Muscle	stomach
28	chr15:72189400-72197400	Strong transcription	Adipose Nuclei	Adipose
29	chr15:72189400-72197400	Strong transcription	Placenta	Placenta
30	chr15:72189400-72197600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr15:72189400-72197800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr15:72189600-72194200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr15:72189600-72194200	Strong transcription	Muscle Satellite Cultured Cells	--
34	chr15:72189600-72194200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr15:72189600-72194600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr15:72189800-72194000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr15:72189800-72194200	Strong transcription	Left Ventricle	heart
38	chr15:72189800-72197200	Strong transcription	Liver	Liver
39	chr15:72189800-72197400	Strong transcription	Primary T helper cells fromperipheralblood	blood
40	chr15:72190000-72194000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr15:72190200-72193800	Strong transcription	Primary B cells from peripheral blood	blood
42	chr15:72190400-72194200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr15:72190400-72195400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr15:72190600-72194000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr15:72190600-72194000	Strong transcription	Pancreas	Pancrea
46	chr15:72190600-72194000	Strong transcription	Monocytes-CD14+_RO01746	blood
47	chr15:72190800-72203800	Weak transcription	HMEC	breast
48	chr15:72190800-72206400	Weak transcription	Brain Hippocampus Middle	brain
49	chr15:72191000-72195400	Weak transcription	Placenta Amnion	Placenta Amnion
50	chr15:72191000-72198600	Weak transcription	Fetal Brain Male	brain

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