Variant report

Variant	rs35010226
Chromosome Location	chr4:82417439-82417440
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10010140	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10010394	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10012642	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10015146	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10023826	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12500201	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12502814	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13102560	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13111699	0.90[ASN][1000 genomes]
rs13128387	1.00[ASN][1000 genomes]
rs13131664	0.95[ASN][1000 genomes]
rs16998600	0.88[ASN][1000 genomes]
rs17005142	0.90[ASN][1000 genomes]
rs17005144	0.90[ASN][1000 genomes]
rs17005145	0.90[ASN][1000 genomes]
rs28479652	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28767523	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28827174	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34128580	0.90[ASN][1000 genomes]
rs34749111	1.00[ASN][1000 genomes]
rs35149381	0.95[ASN][1000 genomes]
rs35991185	0.90[ASN][1000 genomes]
rs36026752	0.90[ASN][1000 genomes]
rs41523946	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4693274	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4693275	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4693276	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4693277	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62303604	0.90[ASN][1000 genomes]
rs6535252	0.90[ASN][1000 genomes]
rs6819741	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6819989	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6825177	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6834665	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7660392	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7678464	1.00[ASN][1000 genomes]
rs7683852	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7684580	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7688827	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7690069	0.95[ASN][1000 genomes]
rs7691170	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9307784	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999729	chr4:81802554-82627820	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv537156	chr4:81802554-82627820	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv829986	chr4:82345163-82509860	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1005254	chr4:82416237-82521768	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:82413800-82425200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr4:82414200-82419200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr4:82415400-82421000	Weak transcription	Brain Anterior Caudate	brain
4	chr4:82415800-82420400	Weak transcription	Fetal Lung	lung
5	chr4:82415800-82421000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr4:82415800-82423800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr4:82415800-82425800	Weak transcription	Right Atrium	heart
8	chr4:82415800-82426000	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr4:82416000-82421000	Weak transcription	Fetal Thymus	thymus
10	chr4:82416400-82421600	Weak transcription	Adipose Nuclei	Adipose
11	chr4:82416600-82427600	Weak transcription	Fetal Intestine Small	intestine
12	chr4:82416800-82420400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr4:82417000-82419600	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr4:82417000-82420000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr4:82417000-82420400	Weak transcription	Primary hematopoietic stem cells	blood
16	chr4:82417200-82420000	Weak transcription	Primary T cells from cord blood	blood
17	chr4:82417200-82423400	Weak transcription	Primary B cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links