The 2.0 version of rSNPBase

Variant report

Variant rs6535252
Chromosome Location chr4:82390465-82390466
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:74 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr4:82354200-82390800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
2 chr4:82363600-82391000 Weak transcription Rectal Smooth Muscle rectum
3 chr4:82368200-82391400 Weak transcription Primary T killer memory cells from peripheral blood blood
4 chr4:82369600-82391000 Weak transcription Skeletal Muscle Male skeletal muscle
5 chr4:82377800-82390800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
6 chr4:82377800-82391000 Weak transcription Dnd41 blood
7 chr4:82378600-82390800 Weak transcription Fetal Stomach stomach
8 chr4:82379000-82391400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
9 chr4:82380600-82391000 Weak transcription Skeletal Muscle Female skeletal muscle
10 chr4:82380600-82391200 Weak transcription Primary Natural Killer cells fromperipheralblood blood
11 chr4:82380600-82391200 Weak transcription Placenta Placenta
12 chr4:82383200-82391000 Weak transcription Colon Smooth Muscle Colon
13 chr4:82387000-82391000 Weak transcription Colonic Mucosa Colon
14 chr4:82387000-82391400 Weak transcription Psoas Muscle Psoas
15 chr4:82387400-82391000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
16 chr4:82387600-82391000 Weak transcription Placenta Amnion Placenta Amnion
17 chr4:82388200-82390800 Enhancers Primary T cells from cord blood blood
18 chr4:82388400-82391000 Enhancers Primary B cells from peripheral blood blood
19 chr4:82388400-82391000 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
20 chr4:82388600-82391400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
21 chr4:82388800-82391200 Enhancers Primary T helper cells fromperipheralblood blood
22 chr4:82388800-82391600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
23 chr4:82389000-82390800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
24 chr4:82389000-82390800 Weak transcription Fetal Lung lung
25 chr4:82389400-82391000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
26 chr4:82389600-82390800 Enhancers Primary hematopoietic stem cells blood
27 chr4:82389600-82390800 Enhancers Fetal Intestine Small intestine
28 chr4:82389600-82390800 Enhancers Rectal Mucosa Donor 31 rectum
29 chr4:82389600-82391000 Enhancers Brain Substantia Nigra brain
30 chr4:82389800-82390600 Flanking Active TSS Primary B cells from cord blood blood
31 chr4:82389800-82390600 Flanking Active TSS Liver Liver
32 chr4:82389800-82390600 Flanking Active TSS Brain Hippocampus Middle brain
33 chr4:82389800-82390800 Active TSS Fetal Brain Male brain
34 chr4:82389800-82390800 Enhancers Sigmoid Colon Sigmoid Colon
35 chr4:82389800-82391000 Enhancers Fetal Intestine Large intestine
36 chr4:82389800-82391400 Enhancers Primary T helper naive cells from peripheral blood blood
37 chr4:82389800-82391400 Active TSS Fetal Brain Female brain
38 chr4:82389800-82391400 Enhancers Small Intestine intestine
39 chr4:82389800-82391400 Enhancers NHEK skin
40 chr4:82389800-82393800 Active TSS hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
41 chr4:82390000-82390600 Flanking Active TSS Primary T helper cells PMA-I stimulated --
42 chr4:82390000-82390600 Flanking Active TSS Adipose Nuclei Adipose
43 chr4:82390000-82390600 Enhancers Stomach Mucosa stomach
44 chr4:82390000-82390800 Enhancers Brain Inferior Temporal Lobe brain
45 chr4:82390000-82391000 Enhancers Primary T helper naive cells fromperipheralblood blood
46 chr4:82390000-82391000 Active TSS Rectal Mucosa Donor 29 rectum
47 chr4:82390000-82391200 Enhancers Primary T killer naive cells fromperipheralblood blood
48 chr4:82390000-82391200 Enhancers Primary mononuclear cells fromperipheralblood Blood
49 chr4:82390000-82391400 Active TSS Right Atrium heart
50 chr4:82390000-82391600 Enhancers Primary T helper memory cells from peripheral blood 1 blood

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Last update: Aug 31, 2015