Variant report

Variant	rs7691170
Chromosome Location	chr4:82413678-82413679
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10010140	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10010394	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10012642	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10015146	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10023826	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12500201	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12502814	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13102560	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13111699	0.95[ASN][1000 genomes]
rs13128387	0.95[ASN][1000 genomes]
rs13131664	1.00[ASN][1000 genomes]
rs16998600	0.93[ASN][1000 genomes]
rs17005142	0.95[ASN][1000 genomes]
rs17005144	0.95[ASN][1000 genomes]
rs17005145	0.95[ASN][1000 genomes]
rs28479652	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28767523	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28827174	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34128580	0.95[ASN][1000 genomes]
rs34749111	0.95[ASN][1000 genomes]
rs35010226	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35149381	1.00[ASN][1000 genomes]
rs35991185	0.95[ASN][1000 genomes]
rs36026752	0.95[ASN][1000 genomes]
rs41523946	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4693274	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4693275	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4693276	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4693277	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62303604	0.95[ASN][1000 genomes]
rs6535252	0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs6819741	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6819989	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6825177	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6834665	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7660392	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7678464	0.95[ASN][1000 genomes]
rs7683852	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7684580	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7688827	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7690069	1.00[ASN][1000 genomes]
rs9307784	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999729	chr4:81802554-82627820	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv537156	chr4:81802554-82627820	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv829986	chr4:82345163-82509860	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:82410000-82415200	Weak transcription	Thymus	Thymus
2	chr4:82410800-82415000	Enhancers	Primary B cells from cord blood	blood
3	chr4:82411000-82413800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
4	chr4:82411200-82415200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr4:82411400-82415000	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr4:82411400-82415000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chr4:82411400-82415200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr4:82411400-82415200	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr4:82411400-82415200	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr4:82411600-82413800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr4:82411600-82415200	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr4:82411600-82415200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
13	chr4:82411800-82415200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr4:82411800-82415800	Enhancers	Primary neutrophils fromperipheralblood	blood
15	chr4:82411800-82417000	Enhancers	Primary B cells from peripheral blood	blood
16	chr4:82412200-82415200	Enhancers	Primary T helper cells PMA-I stimulated	--
17	chr4:82412800-82414800	Enhancers	Primary T cells from cord blood	blood
18	chr4:82412800-82415200	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr4:82412800-82415400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
20	chr4:82413000-82414800	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr4:82413000-82414800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr4:82413000-82415200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
23	chr4:82413000-82415200	Enhancers	Dnd41	blood
24	chr4:82413200-82414400	Enhancers	Stomach Mucosa	stomach
25	chr4:82413200-82415200	Enhancers	GM12878-XiMat	blood
26	chr4:82413400-82413800	Enhancers	Breast Myoepithelial Primary Cells	Breast
27	chr4:82413400-82414000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
28	chr4:82413400-82415200	Enhancers	Primary hematopoietic stem cells	blood
29	chr4:82413600-82413800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr4:82413600-82414000	Enhancers	iPS-20b Cell Line	embryonic stem cell
31	chr4:82413600-82414200	Enhancers	HUES48 Cell Line	embryonic stem cell
32	chr4:82413600-82414200	Enhancers	iPS-18 Cell Line	embryonic stem cell
33	chr4:82413600-82415200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr4:82413600-82415400	Enhancers	Rectal Mucosa Donor 31	rectum

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