Variant report

Variant	rs35030686
Chromosome Location	chr5:178340780-178340781
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12652691	1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12653128	1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12654454	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12654612	1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12654770	0.83[AMR][1000 genomes]
rs12654969	1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12657931	1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1566106	0.82[ASN][1000 genomes]
rs59987112	0.83[AMR][1000 genomes]
rs61200088	0.83[AMR][1000 genomes]
rs62393041	0.82[ASN][1000 genomes]
rs62393043	0.82[ASN][1000 genomes]
rs62393044	0.82[ASN][1000 genomes]
rs62393045	0.82[ASN][1000 genomes]
rs7446382	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883218	chr5:178219855-178349391	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:178335600-178349000	ZNF genes & repeats	Liver	Liver
2	chr5:178335800-178342200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
3	chr5:178335800-178367000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
4	chr5:178339400-178340800	ZNF genes & repeats	Brain Angular Gyrus	brain
5	chr5:178339600-178340800	ZNF genes & repeats	Brain Anterior Caudate	brain
6	chr5:178340000-178340800	Strong transcription	Fetal Kidney	kidney
7	chr5:178340000-178341800	Weak transcription	Pancreas	Pancrea
8	chr5:178340200-178341600	Weak transcription	Psoas Muscle	Psoas
9	chr5:178340200-178342600	Weak transcription	Fetal Stomach	stomach
10	chr5:178340400-178341600	Weak transcription	Aorta	Aorta
11	chr5:178340400-178341600	Weak transcription	Brain Germinal Matrix	brain
12	chr5:178340400-178341600	Weak transcription	Ovary	ovary
13	chr5:178340400-178341600	Weak transcription	Right Ventricle	heart
14	chr5:178340400-178341600	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr5:178340400-178341800	Weak transcription	Brain Cingulate Gyrus	brain
16	chr5:178340400-178341800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr5:178340400-178342800	Weak transcription	Left Ventricle	heart
18	chr5:178340400-178344800	Weak transcription	Fetal Brain Male	brain
19	chr5:178340400-178345400	Weak transcription	Placenta	Placenta
20	chr5:178340600-178341600	Weak transcription	Brain Hippocampus Middle	brain
21	chr5:178340600-178341600	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr5:178340600-178341600	Weak transcription	Fetal Lung	lung
23	chr5:178340600-178341600	Weak transcription	Stomach Smooth Muscle	stomach
24	chr5:178340600-178341800	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr5:178340600-178343000	Weak transcription	Brain Substantia Nigra	brain

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