Variant report

Variant	rs61200088
Chromosome Location	chr5:178381772-178381773
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:178361102..178363466-chr5:178379891..178382466,2	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10516152	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12186577	0.90[ASN][1000 genomes]
rs12652581	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12652691	0.83[AMR][1000 genomes]
rs12653128	0.83[AMR][1000 genomes]
rs12654454	0.83[AMR][1000 genomes]
rs12654612	0.83[AMR][1000 genomes]
rs12654770	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12654969	0.83[AMR][1000 genomes]
rs12657931	0.83[AMR][1000 genomes]
rs17078817	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17078820	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17078829	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2071249	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35030686	0.83[AMR][1000 genomes]
rs35750616	0.99[ASN][1000 genomes]
rs3733915	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58018977	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs58473745	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59987112	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv600489	chr5:178368096-178430375	ZNF genes & repeats Strong transcription Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:178369000-178384800	ZNF genes & repeats	Fetal Stomach	stomach
2	chr5:178369400-178418200	ZNF genes & repeats	Fetal Brain Female	brain
3	chr5:178373200-178385800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:178375600-178381800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr5:178375600-178385800	Weak transcription	Osteobl	bone
6	chr5:178375800-178381800	Weak transcription	Rectal Smooth Muscle	rectum
7	chr5:178376800-178383400	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
8	chr5:178376800-178383600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
9	chr5:178377000-178383600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr5:178378000-178383400	ZNF genes & repeats	Adipose Nuclei	Adipose
11	chr5:178379000-178381800	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr5:178379000-178387400	ZNF genes & repeats	Ovary	ovary
13	chr5:178379800-178382400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
14	chr5:178379800-178383400	ZNF genes & repeats	Fetal Lung	lung
15	chr5:178380000-178382400	ZNF genes & repeats	Liver	Liver
16	chr5:178380000-178383000	ZNF genes & repeats	Brain Hippocampus Middle	brain
17	chr5:178380000-178383000	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
18	chr5:178380000-178383800	ZNF genes & repeats	Fetal Muscle Leg	muscle
19	chr5:178380000-178393600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
20	chr5:178380200-178383400	ZNF genes & repeats	Brain Germinal Matrix	brain
21	chr5:178380400-178382400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr5:178380400-178383000	ZNF genes & repeats	Pancreas	Pancrea
23	chr5:178380400-178383600	ZNF genes & repeats	Fetal Muscle Trunk	muscle
24	chr5:178380600-178383400	Weak transcription	Fetal Intestine Large	intestine
25	chr5:178380800-178381800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr5:178380800-178381800	Weak transcription	Fetal Heart	heart
27	chr5:178380800-178384800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr5:178381000-178383600	ZNF genes & repeats	Fetal Intestine Small	intestine
29	chr5:178381000-178384800	ZNF genes & repeats	Aorta	Aorta
30	chr5:178381400-178383400	ZNF genes & repeats	Fetal Kidney	kidney
31	chr5:178381400-178394200	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
32	chr5:178381600-178382000	ZNF genes & repeats	Esophagus	oesophagus
33	chr5:178381600-178382200	ZNF genes & repeats	Lung	lung
34	chr5:178381600-178382400	ZNF genes & repeats	Brain Cingulate Gyrus	brain
35	chr5:178381600-178382400	ZNF genes & repeats	Brain Substantia Nigra	brain
36	chr5:178381600-178382400	ZNF genes & repeats	Duodenum Mucosa	Duodenum
37	chr5:178381600-178382400	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
38	chr5:178381600-178382600	ZNF genes & repeats	Stomach Smooth Muscle	stomach
39	chr5:178381600-178383000	ZNF genes & repeats	Brain Anterior Caudate	brain
40	chr5:178381600-178383000	ZNF genes & repeats	Fetal Brain Male	brain
41	chr5:178381600-178383000	ZNF genes & repeats	Gastric	stomach
42	chr5:178381600-178383200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr5:178381600-178383400	ZNF genes & repeats	Colon Smooth Muscle	Colon
44	chr5:178381600-178383600	ZNF genes & repeats	Right Ventricle	heart
45	chr5:178381600-178384800	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr5:178381600-178385400	ZNF genes & repeats	Left Ventricle	heart
47	chr5:178381600-178386600	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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