Variant report

Variant	rs59987112
Chromosome Location	chr5:178370582-178370583
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10516152	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12186577	0.97[ASN][1000 genomes]
rs12652581	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12652691	0.83[AMR][1000 genomes]
rs12653128	0.83[AMR][1000 genomes]
rs12654454	0.83[AMR][1000 genomes]
rs12654612	0.83[AMR][1000 genomes]
rs12654770	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12654969	0.83[AMR][1000 genomes]
rs12657931	0.83[AMR][1000 genomes]
rs17078817	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17078820	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17078829	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2071249	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35030686	0.83[AMR][1000 genomes]
rs35750616	0.94[ASN][1000 genomes]
rs3733915	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58018977	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs58473745	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61200088	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv600489	chr5:178368096-178430375	ZNF genes & repeats Strong transcription Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv3322172	chr5:178370246-178374444	ZNF genes & repeats Strong transcription Weak transcription Enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:178353800-178374800	ZNF genes & repeats	Liver	Liver
2	chr5:178366400-178372600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:178367000-178374600	ZNF genes & repeats	Spleen	Spleen
4	chr5:178367400-178370600	ZNF genes & repeats	Fetal Intestine Large	intestine
5	chr5:178368800-178377000	Weak transcription	Psoas Muscle	Psoas
6	chr5:178369000-178371000	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr5:178369000-178371200	Weak transcription	Brain Angular Gyrus	brain
8	chr5:178369000-178371200	Weak transcription	Fetal Kidney	kidney
9	chr5:178369000-178371200	Weak transcription	Left Ventricle	heart
10	chr5:178369000-178372800	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr5:178369000-178373800	Weak transcription	Brain Substantia Nigra	brain
12	chr5:178369000-178374000	Weak transcription	Osteobl	bone
13	chr5:178369000-178374400	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
14	chr5:178369000-178378400	Weak transcription	NHDF-Ad	bronchial
15	chr5:178369000-178378800	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr5:178369000-178380200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr5:178369000-178384800	ZNF genes & repeats	Fetal Stomach	stomach
18	chr5:178369200-178371200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr5:178369200-178371200	Weak transcription	Brain Cingulate Gyrus	brain
20	chr5:178369200-178371800	Weak transcription	Fetal Heart	heart
21	chr5:178369200-178372200	Weak transcription	Right Ventricle	heart
22	chr5:178369200-178373000	Weak transcription	Colon Smooth Muscle	Colon
23	chr5:178369400-178374800	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr5:178369400-178418200	ZNF genes & repeats	Fetal Brain Female	brain
25	chr5:178369600-178370600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr5:178369600-178370600	ZNF genes & repeats	Fetal Brain Male	brain
27	chr5:178369600-178370600	ZNF genes & repeats	Fetal Muscle Leg	muscle
28	chr5:178369600-178370800	ZNF genes & repeats	Brain Hippocampus Middle	brain
29	chr5:178369600-178372200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr5:178369600-178373200	ZNF genes & repeats	Fetal Lung	lung
31	chr5:178369600-178373600	ZNF genes & repeats	Brain Germinal Matrix	brain
32	chr5:178369600-178374400	Strong transcription	Stomach Smooth Muscle	stomach
33	chr5:178369600-178377400	Strong transcription	Fetal Muscle Trunk	muscle
34	chr5:178369800-178373600	Weak transcription	Rectal Smooth Muscle	rectum
35	chr5:178370000-178370600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
36	chr5:178370000-178376200	Weak transcription	Placenta	Placenta
37	chr5:178370000-178378400	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr5:178370200-178370600	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
39	chr5:178370200-178371000	ZNF genes & repeats	Ovary	ovary
40	chr5:178370200-178374200	Strong transcription	Brain Anterior Caudate	brain
41	chr5:178370400-178371400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr5:178370400-178372400	Strong transcription	Pancreas	Pancrea

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