Variant report

Variant	rs35750616
Chromosome Location	chr5:178383769-178383770
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12186577	0.91[ASN][1000 genomes]
rs12654770	0.97[ASN][1000 genomes]
rs58018977	0.90[ASN][1000 genomes]
rs59987112	0.94[ASN][1000 genomes]
rs61200088	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv600489	chr5:178368096-178430375	ZNF genes & repeats Strong transcription Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv328942	chr5:178383675-178384407	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:178369000-178384800	ZNF genes & repeats	Fetal Stomach	stomach
2	chr5:178369400-178418200	ZNF genes & repeats	Fetal Brain Female	brain
3	chr5:178373200-178385800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:178375600-178385800	Weak transcription	Osteobl	bone
5	chr5:178379000-178387400	ZNF genes & repeats	Ovary	ovary
6	chr5:178380000-178383800	ZNF genes & repeats	Fetal Muscle Leg	muscle
7	chr5:178380000-178393600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
8	chr5:178380800-178384800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr5:178381000-178384800	ZNF genes & repeats	Aorta	Aorta
10	chr5:178381400-178394200	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
11	chr5:178381600-178384800	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr5:178381600-178385400	ZNF genes & repeats	Left Ventricle	heart
13	chr5:178381600-178386600	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr5:178382400-178384200	Weak transcription	Fetal Heart	heart
15	chr5:178382400-178384600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr5:178382400-178386000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr5:178382400-178389400	Weak transcription	HSMM	muscle
18	chr5:178382600-178389800	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr5:178383000-178384600	Weak transcription	Brain Hippocampus Middle	brain
20	chr5:178383000-178384600	Weak transcription	Gastric	stomach
21	chr5:178383000-178385200	Weak transcription	Brain Anterior Caudate	brain
22	chr5:178383000-178385200	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr5:178383000-178385400	Weak transcription	Fetal Brain Male	brain
24	chr5:178383000-178389800	Weak transcription	Pancreas	Pancrea
25	chr5:178383200-178384600	Weak transcription	Stomach Smooth Muscle	stomach
26	chr5:178383400-178384600	Weak transcription	Adipose Nuclei	Adipose
27	chr5:178383400-178384600	Weak transcription	Fetal Lung	lung
28	chr5:178383400-178385200	Weak transcription	Fetal Kidney	kidney
29	chr5:178383400-178394400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr5:178383600-178384400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr5:178383600-178384600	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr5:178383600-178385200	Weak transcription	Rectal Smooth Muscle	rectum
33	chr5:178383600-178385200	Weak transcription	Right Ventricle	heart

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