Variant report

Variant	rs35073727
Chromosome Location	chr20:23193918-23193919
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1203982	1.00[AFR][1000 genomes]
rs1210143	1.00[AFR][1000 genomes]
rs1572709	0.81[EUR][1000 genomes]
rs1578078	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2050734	0.81[EUR][1000 genomes]
rs2050735	0.81[EUR][1000 genomes]
rs34397775	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35359496	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4815182	0.83[EUR][1000 genomes]
rs7270823	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912817	chr20:23127661-23240969	Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1066734	chr20:23170094-23277628	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23193400-23195200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr20:23193400-23197000	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr20:23193600-23195800	Weak transcription	NHDF-Ad	bronchial
4	chr20:23193600-23197000	Weak transcription	Monocytes-CD14+_RO01746	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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