Variant report

Variant	rs7270823
Chromosome Location	chr20:23213545-23213546
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1572708	1.00[ASN][1000 genomes]
rs1572709	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1578078	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2050734	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2050735	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34397775	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35073727	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35359496	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4815182	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912817	chr20:23127661-23240969	Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1066734	chr20:23170094-23277628	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23211200-23216000	Enhancers	Stomach Mucosa	stomach
2	chr20:23211600-23214000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr20:23212600-23213800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr20:23212600-23214200	ZNF genes & repeats	Placenta	Placenta
5	chr20:23212600-23215000	Weak transcription	Fetal Muscle Trunk	muscle
6	chr20:23212600-23215000	Weak transcription	Ovary	ovary
7	chr20:23213000-23215000	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr20:23213200-23214000	Flanking Active TSS	HepG2	liver
9	chr20:23213200-23214200	Weak transcription	HSMM	muscle
10	chr20:23213200-23215000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr20:23213400-23213600	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr20:23213400-23215000	Weak transcription	Osteobl	bone

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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