Variant report
Variant | rs35080497 |
---|---|
Chromosome Location | chr7:112961661-112961662 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10500026 | 0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs10953730 | 0.88[ASN][1000 genomes] |
rs11761466 | 0.88[ASN][1000 genomes] |
rs11982259 | 0.82[ASN][1000 genomes] |
rs12705858 | 0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs13227231 | 0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs13227345 | 0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs13228379 | 0.88[ASN][1000 genomes] |
rs13230022 | 0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs13240515 | 0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs13246534 | 0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs13246541 | 0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs1357744 | 0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs1524443 | 0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs1701829 | 0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs17136276 | 0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs17413268 | 0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs17413351 | 0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs17498088 | 0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs17498416 | 0.85[ASN][1000 genomes] |
rs2091159 | 0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs2140636 | 0.88[ASN][1000 genomes] |
rs2396621 | 0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs34349491 | 0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs34394039 | 0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs34448224 | 0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs34489788 | 0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs35152946 | 0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs35649392 | 0.88[ASN][1000 genomes] |
rs55924370 | 0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs55957513 | 0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs55993020 | 0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs56205248 | 0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs56258749 | 0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs60321964 | 0.80[ASN][1000 genomes] |
rs60454787 | 0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs62487666 | 0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs62487718 | 0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs62487719 | 0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs62490164 | 0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs6943756 | 0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs6975850 | 0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs6977108 | 0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs7780151 | 0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs7780773 | 0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs7784560 | 0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs7786455 | 0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs7791408 | 0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs7792063 | 0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs7808415 | 0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs881918 | 0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | esv3355135 | chr7:112616979-113134651 | Active TSS Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
2 | nsv435847 | chr7:112618576-113134022 | Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
3 | esv3430638 | chr7:112620663-113134403 | Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
4 | esv3442221 | chr7:112620665-113134971 | Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
5 | nsv993501 | chr7:112625029-113125338 | Enhancers Bivalent/Poised TSS Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
6 | nsv1022066 | chr7:112630168-113122748 | Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
7 | nsv539090 | chr7:112630168-113122748 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
8 | nsv889060 | chr7:112766082-112994137 | Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
9 | nsv889061 | chr7:112871926-112987650 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
10 | esv1825934 | chr7:112886872-112989772 | Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Weak transcription | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
11 | nsv464690 | chr7:112908788-112989772 | Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
12 | nsv608227 | chr7:112908788-112989772 | Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
13 | nsv889062 | chr7:112920080-113138047 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
14 | nsv831098 | chr7:112936711-113090844 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr7:112961400-112961800 | Enhancers | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
2 | chr7:112961600-112962000 | Enhancers | Rectal Smooth Muscle | rectum |