Variant report

Variant	rs35102493
Chromosome Location	chr10:89637067-89637068
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:89636553-89638419	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr10:89630597..89633078-chr10:89635123..89637172,2	MCF-7	breast:
2	chr10:89621343..89626061-chr10:89634894..89638873,7	K562	blood:
3	chr10:89632106..89634679-chr10:89635218..89637761,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000224745	TF binding region
ENSG00000227268	Chromatin interaction
ENSG00000171862	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs35846550	0.83[LWK][hapmap];1.00[YRI][hapmap]
rs35922336	1.00[AFR][1000 genomes]
rs35930911	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044700	chr10:89615125-89641293	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
2	esv1793643	chr10:89625582-89645473	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv1793518	chr10:89625582-89733420	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	esv1798260	chr10:89625582-89733420	Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv1035278	chr10:89629273-89641293	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv551832	chr10:89630424-89650759	Strong transcription Transcr. at gene 5' and 3' Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1050406	chr10:89632138-89657906	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	esv275087	chr10:89632510-89642848	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89624400-89646400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:89625600-89663000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr10:89627200-89645800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr10:89627400-89638200	Weak transcription	Placenta	Placenta
5	chr10:89627600-89645600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr10:89628200-89646200	Weak transcription	Fetal Muscle Leg	muscle
7	chr10:89628200-89646600	Weak transcription	Colonic Mucosa	Colon
8	chr10:89628400-89637800	Weak transcription	Fetal Intestine Small	intestine
9	chr10:89628400-89662000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr10:89628600-89638200	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr10:89628600-89645800	Weak transcription	HSMMtube	muscle
12	chr10:89628800-89638400	Weak transcription	K562	blood
13	chr10:89628800-89645600	Weak transcription	Fetal Kidney	kidney
14	chr10:89628800-89647000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr10:89629000-89637600	Weak transcription	HMEC	breast
16	chr10:89629400-89637600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr10:89629400-89646200	Weak transcription	Fetal Muscle Trunk	muscle
18	chr10:89629800-89637400	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr10:89629800-89637600	Weak transcription	NHEK	skin
20	chr10:89629800-89644600	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr10:89630000-89638200	Weak transcription	Stomach Mucosa	stomach
22	chr10:89630000-89645600	Weak transcription	NH-A	brain
23	chr10:89630200-89637600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr10:89631000-89638400	Weak transcription	Fetal Heart	heart
25	chr10:89631000-89645600	Weak transcription	Fetal Brain Female	brain
26	chr10:89631000-89645800	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr10:89631000-89647400	Weak transcription	Fetal Brain Male	brain
28	chr10:89631000-89663400	Weak transcription	Brain Angular Gyrus	brain
29	chr10:89631200-89638200	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr10:89631600-89637800	Weak transcription	Fetal Intestine Large	intestine
31	chr10:89631600-89645400	Weak transcription	Duodenum Mucosa	Duodenum
32	chr10:89631600-89647400	Weak transcription	Gastric	stomach
33	chr10:89631600-89647400	Weak transcription	Psoas Muscle	Psoas
34	chr10:89632200-89638200	Enhancers	Primary T helper cells PMA-I stimulated	--
35	chr10:89632800-89638200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr10:89633000-89642200	Weak transcription	Colon Smooth Muscle	Colon
37	chr10:89633000-89663400	Weak transcription	Pancreas	Pancrea
38	chr10:89633200-89637200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr10:89633400-89637800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr10:89633400-89644600	Weak transcription	Thymus	Thymus
41	chr10:89633400-89645200	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr10:89633400-89645600	Weak transcription	Primary T cells fromperipheralblood	blood
43	chr10:89633400-89645600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr10:89633400-89645600	Weak transcription	Left Ventricle	heart
45	chr10:89633400-89645800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr10:89633400-89645800	Weak transcription	Fetal Stomach	stomach
47	chr10:89633400-89645800	Weak transcription	Lung	lung
48	chr10:89633400-89646000	Weak transcription	Ovary	ovary
49	chr10:89633400-89646400	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr10:89633400-89646600	Weak transcription	Stomach Smooth Muscle	stomach

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