Variant report

Variant	rs35103832
Chromosome Location	chr14:64326579-64326580
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:64318382..64321162-chr14:64323828..64326705,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000054654	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs12879641	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12880477	0.94[ASN][1000 genomes]
rs12881241	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12882972	0.97[ASN][1000 genomes]
rs12883728	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12884259	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12887573	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12889107	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12889504	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12894035	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12894619	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12896216	0.94[ASN][1000 genomes]
rs12898127	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17101419	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17101437	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17225497	0.94[ASN][1000 genomes]
rs1890908	0.82[CEU][hapmap]
rs1959033	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2356994	0.94[ASN][1000 genomes]
rs34252863	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34292510	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34294645	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35244884	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35353466	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35499091	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35635100	0.97[ASN][1000 genomes]
rs35672192	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35752453	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35773852	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35860218	0.97[ASN][1000 genomes]
rs57010514	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs71416311	0.97[ASN][1000 genomes]
rs71416313	0.97[ASN][1000 genomes]
rs71416318	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs71437513	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8003797	0.97[ASN][1000 genomes]
rs9707777	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915909	chr14:63620440-64560369	Active TSS Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv1038825	chr14:64109441-64491720	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv1037140	chr14:64248421-64442980	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv542119	chr14:64248421-64442980	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64321200-64327000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr14:64321200-64333800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr14:64321200-64334600	Weak transcription	Pancreas	Pancrea
4	chr14:64321200-64340600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr14:64321400-64330600	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr14:64321400-64331200	Weak transcription	Rectal Smooth Muscle	rectum
7	chr14:64321400-64350200	Weak transcription	Fetal Stomach	stomach
8	chr14:64321600-64326800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr14:64322200-64327600	Weak transcription	Psoas Muscle	Psoas
10	chr14:64322400-64326600	Weak transcription	Gastric	stomach
11	chr14:64322400-64327800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr14:64322400-64334400	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr14:64322600-64327000	Weak transcription	Fetal Intestine Large	intestine
14	chr14:64322600-64331200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr14:64322600-64331200	Weak transcription	Duodenum Mucosa	Duodenum
16	chr14:64322800-64326800	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr14:64322800-64329000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
18	chr14:64322800-64330000	Weak transcription	Fetal Kidney	kidney
19	chr14:64322800-64330000	Weak transcription	HepG2	liver
20	chr14:64322800-64330600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
21	chr14:64322800-64330800	Enhancers	Primary T cells fromperipheralblood	blood
22	chr14:64322800-64340400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr14:64322800-64340600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr14:64323000-64326800	Weak transcription	Fetal Brain Female	brain
25	chr14:64323000-64326800	Weak transcription	Fetal Heart	heart
26	chr14:64323000-64327000	Weak transcription	Fetal Lung	lung
27	chr14:64323000-64327200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr14:64323000-64329000	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr14:64323000-64330000	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr14:64323000-64330200	Weak transcription	Primary T cells from cord blood	blood
31	chr14:64323000-64330400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr14:64323000-64332800	Weak transcription	Fetal Intestine Small	intestine
33	chr14:64323000-64333000	Weak transcription	Ovary	ovary
34	chr14:64323200-64331200	Weak transcription	Right Atrium	heart
35	chr14:64323200-64334400	Weak transcription	Aorta	Aorta
36	chr14:64323200-64340200	Weak transcription	Left Ventricle	heart
37	chr14:64323200-64340400	Weak transcription	Spleen	Spleen
38	chr14:64323400-64326800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
39	chr14:64324000-64330200	Enhancers	Primary T helper cells PMA-I stimulated	--
40	chr14:64324200-64329800	Weak transcription	Brain Germinal Matrix	brain
41	chr14:64324200-64330800	Weak transcription	Hela-S3	cervix
42	chr14:64324400-64327000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr14:64324400-64327000	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr14:64324400-64327000	Weak transcription	Dnd41	blood
45	chr14:64324400-64329200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr14:64324400-64330800	Weak transcription	HUES48 Cell Line	embryonic stem cell
47	chr14:64324400-64331200	Enhancers	Primary T killer memory cells from peripheral blood	blood
48	chr14:64324600-64326800	Weak transcription	Stomach Mucosa	stomach
49	chr14:64324600-64327000	Weak transcription	GM12878-XiMat	blood
50	chr14:64324600-64328800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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