Variant report

Variant	rs35860218
Chromosome Location	chr14:64254751-64254752
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:64253240..64254789-chr14:64255821..64258714,2	MCF-7	breast:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs12879641	0.97[ASN][1000 genomes]
rs12880477	0.97[ASN][1000 genomes]
rs12881241	1.00[ASN][1000 genomes]
rs12882972	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12883728	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12884259	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12887573	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12889107	0.86[ASN][1000 genomes]
rs12889504	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12894035	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12894619	1.00[ASN][1000 genomes]
rs12896216	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12898127	1.00[ASN][1000 genomes]
rs17101437	0.86[ASN][1000 genomes]
rs17225497	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1959033	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2356994	0.97[ASN][1000 genomes]
rs34252863	0.86[ASN][1000 genomes]
rs34292510	0.89[ASN][1000 genomes]
rs34294645	0.89[ASN][1000 genomes]
rs35103832	0.97[ASN][1000 genomes]
rs35244884	1.00[ASN][1000 genomes]
rs35353466	1.00[ASN][1000 genomes]
rs35499091	0.86[ASN][1000 genomes]
rs35635100	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs35672192	0.86[ASN][1000 genomes]
rs35752453	1.00[ASN][1000 genomes]
rs35773852	1.00[ASN][1000 genomes]
rs57010514	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs71416311	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71416313	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71416318	1.00[ASN][1000 genomes]
rs71437513	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs8003797	1.00[ASN][1000 genomes]
rs9707777	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915909	chr14:63620440-64560369	Active TSS Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv1048645	chr14:64057327-64283872	Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv1038825	chr14:64109441-64491720	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	nsv564902	chr14:64230089-64280206	Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1037140	chr14:64248421-64442980	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv542119	chr14:64248421-64442980	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv564903	chr14:64248549-64266899	Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64254000-64256200	Strong transcription	Primary neutrophils fromperipheralblood	blood
2	chr14:64254200-64255400	Genic enhancers	Placenta	Placenta
3	chr14:64254200-64255600	Enhancers	Fetal Muscle Leg	muscle
4	chr14:64254400-64255000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr14:64254400-64255200	Enhancers	Ovary	ovary
6	chr14:64254400-64256400	Enhancers	Fetal Muscle Trunk	muscle
7	chr14:64254600-64254800	Flanking Bivalent TSS/Enh	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr14:64254600-64254800	Active TSS	Stomach Smooth Muscle	stomach
9	chr14:64254600-64255000	Enhancers	Psoas Muscle	Psoas
10	chr14:64254600-64255000	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
11	chr14:64254600-64255000	Active TSS	Skeletal Muscle Female	skeletal muscle
12	chr14:64254600-64255400	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr14:64254600-64255600	Enhancers	Fetal Stomach	stomach
14	chr14:64254600-64275200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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