Variant report

Variant	rs71416311
Chromosome Location	chr14:64259604-64259605
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:64258294..64260685-chr14:64264198..64267177,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs12879641	0.97[ASN][1000 genomes]
rs12880477	0.97[ASN][1000 genomes]
rs12881241	1.00[ASN][1000 genomes]
rs12882972	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12883728	1.00[ASN][1000 genomes]
rs12884259	1.00[ASN][1000 genomes]
rs12887573	1.00[ASN][1000 genomes]
rs12889107	0.86[ASN][1000 genomes]
rs12889504	1.00[ASN][1000 genomes]
rs12894035	1.00[ASN][1000 genomes]
rs12894619	1.00[ASN][1000 genomes]
rs12896216	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12898127	1.00[ASN][1000 genomes]
rs17101437	0.86[ASN][1000 genomes]
rs17225497	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1959033	1.00[ASN][1000 genomes]
rs2356994	0.97[ASN][1000 genomes]
rs34252863	0.86[ASN][1000 genomes]
rs34292510	0.89[ASN][1000 genomes]
rs34294645	0.89[ASN][1000 genomes]
rs35103832	0.97[ASN][1000 genomes]
rs35244884	1.00[ASN][1000 genomes]
rs35353466	1.00[ASN][1000 genomes]
rs35499091	0.86[ASN][1000 genomes]
rs35635100	1.00[ASN][1000 genomes]
rs35672192	0.86[ASN][1000 genomes]
rs35752453	1.00[ASN][1000 genomes]
rs35773852	1.00[ASN][1000 genomes]
rs35860218	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57010514	1.00[ASN][1000 genomes]
rs71416313	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71416318	1.00[ASN][1000 genomes]
rs71437513	1.00[ASN][1000 genomes]
rs8003797	1.00[ASN][1000 genomes]
rs9707777	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915909	chr14:63620440-64560369	Active TSS Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv1048645	chr14:64057327-64283872	Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv1038825	chr14:64109441-64491720	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	nsv564902	chr14:64230089-64280206	Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1037140	chr14:64248421-64442980	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv542119	chr14:64248421-64442980	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv564903	chr14:64248549-64266899	Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv977477	chr14:64257537-64259998	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64254600-64275200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr14:64255400-64265600	Weak transcription	Placenta	Placenta
3	chr14:64255400-64270000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr14:64255600-64260000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr14:64256200-64272200	Weak transcription	Primary neutrophils fromperipheralblood	blood

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