Variant report

Variant	rs35115571
Chromosome Location	chr14:32188167-32188168
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs12588396	0.85[EUR][1000 genomes]
rs12589227	0.95[EUR][1000 genomes]
rs12590215	0.84[EUR][1000 genomes]
rs12590375	0.82[EUR][1000 genomes]
rs12590381	0.94[EUR][1000 genomes]
rs12590836	0.83[EUR][1000 genomes]
rs12878022	0.95[EUR][1000 genomes]
rs12878072	0.94[EUR][1000 genomes]
rs12881327	0.92[EUR][1000 genomes]
rs12892973	0.95[EUR][1000 genomes]
rs17390827	0.90[EUR][1000 genomes]
rs1822355	0.94[EUR][1000 genomes]
rs34327830	0.93[EUR][1000 genomes]
rs34505839	0.90[EUR][1000 genomes]
rs34827813	0.90[EUR][1000 genomes]
rs35144494	0.94[EUR][1000 genomes]
rs35334661	0.81[EUR][1000 genomes]
rs35712231	0.87[EUR][1000 genomes]
rs35942871	0.95[EUR][1000 genomes]
rs36161359	0.82[EUR][1000 genomes]
rs4011635	0.83[EUR][1000 genomes]
rs4981112	0.95[EUR][1000 genomes]
rs4981113	0.95[EUR][1000 genomes]
rs4981123	0.94[EUR][1000 genomes]
rs4981881	0.95[EUR][1000 genomes]
rs61997404	0.94[EUR][1000 genomes]
rs7142149	0.91[EUR][1000 genomes]
rs7142801	0.89[EUR][1000 genomes]
rs7152244	0.90[EUR][1000 genomes]
rs8006164	0.90[EUR][1000 genomes]
rs8011663	0.85[EUR][1000 genomes]
rs8014386	0.95[EUR][1000 genomes]
rs8019075	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934206	chr14:31887749-32257097	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv564180	chr14:31958566-32368934	Strong transcription Enhancers Transcr. at gene 5' and 3' Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv564181	chr14:31958761-32363980	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv901591	chr14:32093548-32202677	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv901592	chr14:32093548-32267323	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv564182	chr14:32110519-32584337	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
7	nsv1046526	chr14:32110537-32567426	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
8	nsv456199	chr14:32183849-32241873	ZNF genes & repeats Enhancers Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv564183	chr14:32183849-32241873	Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32165600-32188200	Weak transcription	Right Ventricle	heart
2	chr14:32171000-32200600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr14:32172000-32188200	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr14:32173400-32189800	Weak transcription	Primary B cells from cord blood	blood
5	chr14:32173400-32218000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr14:32174600-32200000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr14:32175400-32193400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr14:32175400-32205600	Weak transcription	Ovary	ovary
9	chr14:32181400-32200600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr14:32186200-32188200	Enhancers	Liver	Liver
11	chr14:32186400-32188400	Enhancers	Rectal Smooth Muscle	rectum
12	chr14:32186400-32188600	Enhancers	Fetal Heart	heart
13	chr14:32186800-32205600	Weak transcription	Primary T cells from cord blood	blood
14	chr14:32187000-32188200	Weak transcription	Psoas Muscle	Psoas
15	chr14:32187200-32196000	Weak transcription	Aorta	Aorta
16	chr14:32187400-32188400	Enhancers	Fetal Brain Female	brain
17	chr14:32187400-32199000	Weak transcription	HepG2	liver
18	chr14:32188000-32188200	Enhancers	Fetal Brain Male	brain
19	chr14:32188000-32188400	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr14:32188000-32188600	Enhancers	Fetal Lung	lung

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