Variant report

Variant	rs351229
Chromosome Location	chr15:74483020-74483021
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:74471188..74474733-chr15:74480852..74485546,5	MCF-7	breast:
2	chr15:74481853..74488513-chr15:74489689..74497281,13	MCF-7	breast:

Variant related genes	Relation type
ENSG00000259264	Chromatin interaction
ENSG00000137868	Chromatin interaction
ENSG00000261543	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11630438	0.91[ASN][1000 genomes]
rs11635868	0.95[CHB][hapmap];0.92[CHD][hapmap];0.82[JPT][hapmap];0.94[MEX][hapmap];0.81[TSI][hapmap];0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2277608	0.84[ASN][1000 genomes]
rs351225	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs351226	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs351228	0.81[LWK][hapmap]
rs351230	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs351233	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs351237	0.86[CHB][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs351238	0.86[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs736118	0.85[CEU][hapmap];0.86[CHB][hapmap];0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833053	chr15:74360156-74555140	Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv1050884	chr15:74394983-74489413	Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv833054	chr15:74457643-74625283	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv904345	chr15:74458181-74526596	Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv904346	chr15:74458181-74548773	Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv904347	chr15:74462629-74537101	Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv904348	chr15:74462629-74542686	Genic enhancers Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74466200-74492800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr15:74469200-74491800	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr15:74469400-74487600	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr15:74469400-74493200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr15:74470600-74484000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr15:74470800-74492800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr15:74473600-74488200	Weak transcription	Right Atrium	heart
8	chr15:74474000-74483400	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr15:74474600-74487200	Weak transcription	Fetal Intestine Small	intestine
10	chr15:74478600-74483800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr15:74478600-74484000	Weak transcription	HSMM	muscle
12	chr15:74478600-74484000	Weak transcription	NHDF-Ad	bronchial
13	chr15:74478600-74485000	Weak transcription	Esophagus	oesophagus
14	chr15:74478600-74491400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr15:74478800-74484000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr15:74479400-74485000	Weak transcription	NH-A	brain
17	chr15:74479800-74484800	Weak transcription	GM12878-XiMat	blood
18	chr15:74480000-74484000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr15:74480600-74491800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr15:74480800-74486400	Genic enhancers	Placenta	Placenta
21	chr15:74481000-74488400	Weak transcription	Right Ventricle	heart
22	chr15:74482600-74484800	Enhancers	Placenta Amnion	Placenta Amnion
23	chr15:74482600-74485200	Strong transcription	A549	lung
24	chr15:74482800-74488000	Strong transcription	Fetal Stomach	stomach
25	chr15:74483000-74484000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr15:74483000-74484600	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr15:74483000-74484800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr15:74483000-74485000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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