Variant report

Variant	rs736118
Chromosome Location	chr15:74473739-74473740
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:74471188..74474733-chr15:74480852..74485546,5	MCF-7	breast:
2	chr15:74471878..74474660-chr15:74491803..74495339,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137868	Chromatin interaction
ENSG00000259264	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1052622	0.82[JPT][hapmap]
rs11630438	0.83[AFR][1000 genomes]
rs11635868	0.82[CHB][hapmap];0.81[JPT][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs1385650	0.82[JPT][hapmap]
rs2277608	0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs351229	0.85[CEU][hapmap];0.86[CHB][hapmap];0.81[JPT][hapmap]
rs351230	0.85[CEU][hapmap];0.86[CHB][hapmap];0.81[JPT][hapmap]
rs351237	0.91[CHB][hapmap];0.81[JPT][hapmap]
rs351238	0.90[CHB][hapmap];0.86[JPT][hapmap]
rs4886578	0.87[MEX][hapmap];0.86[AMR][1000 genomes]
rs4887066	0.92[GIH][hapmap];0.85[TSI][hapmap]
rs6495089	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833053	chr15:74360156-74555140	Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv1050884	chr15:74394983-74489413	Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv833054	chr15:74457643-74625283	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv904345	chr15:74458181-74526596	Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv904346	chr15:74458181-74548773	Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv904347	chr15:74462629-74537101	Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv904348	chr15:74462629-74542686	Genic enhancers Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74466200-74492800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr15:74466600-74480600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr15:74467400-74473800	Enhancers	NHDF-Ad	bronchial
4	chr15:74469200-74474000	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr15:74469200-74491800	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr15:74469400-74487600	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr15:74469400-74493200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr15:74470000-74473800	Enhancers	Left Ventricle	heart
9	chr15:74470600-74474000	Enhancers	Lung	lung
10	chr15:74470600-74475600	Weak transcription	Fetal Kidney	kidney
11	chr15:74470600-74484000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr15:74470800-74492800	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr15:74471200-74473800	Enhancers	Spleen	Spleen
14	chr15:74471400-74473800	Enhancers	Esophagus	oesophagus
15	chr15:74471400-74475200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr15:74471800-74478000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr15:74472000-74477400	Genic enhancers	Placenta	Placenta
18	chr15:74472200-74474600	Strong transcription	Fetal Intestine Small	intestine
19	chr15:74472400-74473800	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr15:74472400-74473800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
21	chr15:74472400-74473800	Enhancers	Hela-S3	cervix
22	chr15:74472400-74477200	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr15:74472600-74474000	Strong transcription	HUES6 Cell Line	embryonic stem cell
24	chr15:74473000-74474000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr15:74473000-74474200	Genic enhancers	A549	lung
26	chr15:74473200-74473800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr15:74473200-74473800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr15:74473200-74478000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr15:74473200-74478000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr15:74473400-74475000	Strong transcription	Fetal Stomach	stomach
31	chr15:74473400-74477600	Weak transcription	Osteobl	bone
32	chr15:74473600-74474600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr15:74473600-74476000	Weak transcription	Right Ventricle	heart
34	chr15:74473600-74477000	Weak transcription	GM12878-XiMat	blood
35	chr15:74473600-74477400	Weak transcription	Gastric	stomach
36	chr15:74473600-74477800	Weak transcription	HMEC	breast
37	chr15:74473600-74477800	Weak transcription	NH-A	brain
38	chr15:74473600-74478000	Weak transcription	Fetal Thymus	thymus
39	chr15:74473600-74478200	Weak transcription	HSMM	muscle
40	chr15:74473600-74488200	Weak transcription	Right Atrium	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links