Variant report

Variant	rs351238
Chromosome Location	chr15:74477216-74477217
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:6)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:6 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:74477131-74477400	A549	lung:	n/a	n/a
2	ELF1	chr15:74477026-74477443	GM12878	blood:	n/a	n/a
3	BCL3	chr15:74477172-74477415	GM12878	blood:	n/a	n/a
4	POLR2A	chr15:74477208-74478558	A549	lung:	n/a	n/a
5	BCL3	chr15:74477076-74477507	GM12878	blood:	n/a	n/a
6	POLR2A	chr15:74477094-74477230	A549	lung:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:74466900..74472029-chr15:74474380..74478364,5	K562	blood:
2	chr15:74426280..74428473-chr15:74476788..74479441,2	MCF-7	breast:
3	chr15:74476268..74481114-chr15:74481144..74486021,6	MCF-7	breast:
4	chr15:74466900..74472644-chr15:74474380..74478364,5	K562	blood:
5	chr15:74476521..74478452-chr15:74481567..74483240,2	K562	blood:
6	chr15:74468916..74471772-chr15:74477049..74479874,2	MCF-7	breast:

No data

Variant related genes	Relation type
STRA6	TF binding region
ENSG00000137868	Chromatin interaction
ENSG00000261543	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11630438	0.83[ASN][1000 genomes]
rs11635868	0.81[CHB][hapmap]
rs2277608	0.95[ASN][1000 genomes]
rs351225	0.88[ASN][1000 genomes]
rs351226	0.89[ASN][1000 genomes]
rs351229	0.86[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs351230	0.86[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs351237	0.94[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4886574	0.83[CEU][hapmap]
rs6495089	0.84[CEU][hapmap]
rs736118	0.90[CHB][hapmap];0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833053	chr15:74360156-74555140	Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv1050884	chr15:74394983-74489413	Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv833054	chr15:74457643-74625283	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv904345	chr15:74458181-74526596	Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv904346	chr15:74458181-74548773	Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv904347	chr15:74462629-74537101	Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv904348	chr15:74462629-74542686	Genic enhancers Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74466200-74492800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr15:74466600-74480600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr15:74469200-74491800	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr15:74469400-74487600	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr15:74469400-74493200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr15:74470600-74484000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr15:74470800-74492800	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr15:74471800-74478000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr15:74472000-74477400	Genic enhancers	Placenta	Placenta
10	chr15:74473200-74478000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr15:74473200-74478000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr15:74473400-74477600	Weak transcription	Osteobl	bone
13	chr15:74473600-74477400	Weak transcription	Gastric	stomach
14	chr15:74473600-74477800	Weak transcription	HMEC	breast
15	chr15:74473600-74477800	Weak transcription	NH-A	brain
16	chr15:74473600-74478000	Weak transcription	Fetal Thymus	thymus
17	chr15:74473600-74478200	Weak transcription	HSMM	muscle
18	chr15:74473600-74488200	Weak transcription	Right Atrium	heart
19	chr15:74473800-74477600	Weak transcription	NHDF-Ad	bronchial
20	chr15:74473800-74477800	Weak transcription	Esophagus	oesophagus
21	chr15:74474000-74483400	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr15:74474600-74487200	Weak transcription	Fetal Intestine Small	intestine
23	chr15:74475200-74480000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr15:74475600-74478400	Strong transcription	Fetal Stomach	stomach
25	chr15:74475600-74483000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr15:74476400-74482600	Weak transcription	A549	lung
27	chr15:74477000-74479800	Enhancers	GM12878-XiMat	blood
28	chr15:74477200-74477400	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr15:74477200-74478000	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr15:74477200-74478200	Enhancers	Placenta Amnion	Placenta Amnion

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