Variant report
| Variant | rs35127300 |
|---|---|
| Chromosome Location | chr11:25755659-25755660 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:17)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:17 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | RAD21 | chr11:25755245-25756586 | Hela-S3 | cervix: | n/a | chr11:25756335-25756354 chr11:25755496-25755515 |
| 2 | SMC3 | chr11:25755050-25755866 | Hela-S3 | cervix: | n/a | n/a |
| 3 | RFX5 | chr11:25755280-25756560 | Hela-S3 | cervix: | n/a | n/a |
| 4 | RAD21 | chr11:25755238-25755713 | MCF-7 | breast: | n/a | chr11:25755496-25755515 |
| 5 | RAD21 | chr11:25754889-25756013 | SK-N-SH | brain: | n/a | chr11:25755496-25755515 |
| 6 | CTCF | chr11:25755520-25755670 | HMF | breast: | n/a | n/a |
| 7 | RAD21 | chr11:25755397-25755668 | MCF-7 | breast: | n/a | chr11:25755496-25755515 |
| 8 | CTCF | chr11:25755540-25755690 | HCM | heart: | n/a | n/a |
| 9 | RAD21 | chr11:25755308-25755742 | H1-hESC | embryonic stem cell: | n/a | chr11:25755496-25755515 |
| 10 | CTCF | chr11:25755308-25755732 | MCF-7 | breast: | n/a | chr11:25755493-25755514 chr11:25755498-25755516 |
| 11 | RAD21 | chr11:25755269-25755737 | H1-hESC | embryonic stem cell: | n/a | chr11:25755496-25755515 |
| 12 | CTCF | chr11:25755620-25755770 | AG04450 | lung: | n/a | n/a |
| 13 | RAD21 | chr11:25755315-25755660 | SK-N-SH_RA | brain: | n/a | chr11:25755496-25755515 |
| 14 | CEBPB | chr11:25755348-25755781 | Hela-S3 | cervix: | n/a | chr11:25755487-25755500 |
| 15 | STAT3 | chr11:25755575-25755775 | MCF10A-Er-Src | breast: | n/a | n/a |
| 16 | POLR2A | chr11:25755520-25755660 | MCF10A-Er-Src | breast: | n/a | n/a |
| 17 | RAD21 | chr11:25755254-25755659 | SK-N-SH_RA | brain: | n/a | chr11:25755496-25755515 |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000254456 | TF binding region |
rSNPs within LD-proxies of this variant (count:13)
| rs_ID | r2[population] |
|---|---|
| rs12789056 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12794005 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12804030 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12807513 | 1.00[AFR][1000 genomes] |
| rs12807663 | 1.00[AFR][1000 genomes] |
| rs12808360 | 1.00[AFR][1000 genomes] |
| rs34106414 | 1.00[AFR][1000 genomes] |
| rs34623259 | 1.00[AFR][1000 genomes] |
| rs34726333 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs35156643 | 1.00[AFR][1000 genomes] |
| rs35773205 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs61900966 | 1.00[AFR][1000 genomes] |
| rs71478165 | 1.00[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2760599 | chr11:25186984-26159450 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv1046507 | chr11:25469712-26111707 | Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | esv2759811 | chr11:25564190-25842666 | Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv1041080 | chr11:25585107-25931087 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 5 | nsv1039190 | chr11:25592509-25925352 | Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 6 | nsv540973 | chr11:25592509-25925352 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 7 | nsv1044636 | chr11:25633583-25764193 | Weak transcription Enhancers Active TSS ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 8 | esv2758259 | chr11:25633803-25842666 | Enhancers ZNF genes & repeats Weak transcription Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 9 | nsv428252 | chr11:25633803-25842666 | Enhancers ZNF genes & repeats Weak transcription Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 10 | nsv897137 | chr11:25730008-25796742 | Enhancers ZNF genes & repeats Weak transcription Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 11 | esv1825232 | chr11:25750628-25779039 | Active TSS Enhancers Weak transcription ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:25755000-25756200 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
| 2 | chr11:25755600-25756800 | Enhancers | ES-I3 Cell Line | embryonic stem cell |
