Variant report

Variant	rs35163714
Chromosome Location	chr8:105511684-105511685
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr8:105494376-105512670	K562	blood:	n/a	n/a
2	STAT3	chr8:105511549-105511892	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:105511204..105512994-chr8:105513292..105516269,2	MCF-7	breast:

Variant related genes	Relation type
LRP12	TF binding region

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs4427139	1.00[AMR][1000 genomes]
rs57061880	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57149580	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59042845	1.00[AMR][1000 genomes]
rs59429525	1.00[AMR][1000 genomes]
rs60616186	1.00[AMR][1000 genomes]
rs61129183	0.81[AFR][1000 genomes]
rs61148214	1.00[AMR][1000 genomes]
rs61360760	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73293276	0.96[AFR][1000 genomes]
rs73293278	0.90[AFR][1000 genomes]
rs73293290	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73293292	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73293298	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73295103	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73295108	0.81[AFR][1000 genomes]
rs73295113	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73295116	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73295133	0.81[AFR][1000 genomes]
rs73295148	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73295155	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73295157	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73295168	1.00[AMR][1000 genomes]
rs73295174	1.00[AMR][1000 genomes]
rs73295188	1.00[AMR][1000 genomes]
rs73297103	1.00[AMR][1000 genomes]
rs73297116	1.00[AMR][1000 genomes]
rs73297130	1.00[AMR][1000 genomes]
rs73297134	1.00[AMR][1000 genomes]
rs73297137	1.00[AMR][1000 genomes]
rs73297149	1.00[AMR][1000 genomes]
rs7812405	0.81[AFR][1000 genomes]
rs7813481	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7832864	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016087	chr8:105228670-105934368	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1026754	chr8:105382508-106030916	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	nsv539709	chr8:105382508-106030916	Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
4	nsv831417	chr8:105455814-105625608	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:105489400-105512800	Weak transcription	Gastric	stomach
2	chr8:105491400-105517200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr8:105495600-105525800	Weak transcription	Psoas Muscle	Psoas
4	chr8:105499200-105542200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr8:105500800-105519800	Strong transcription	Dnd41	blood
6	chr8:105501400-105515000	Weak transcription	Spleen	Spleen
7	chr8:105501400-105516200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr8:105501400-105517400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr8:105501400-105517400	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr8:105501600-105512200	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr8:105501600-105520800	Weak transcription	Rectal Smooth Muscle	rectum
12	chr8:105501800-105518800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr8:105501800-105521000	Weak transcription	NHEK	skin
14	chr8:105502000-105518400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr8:105503600-105519000	Weak transcription	Fetal Intestine Small	intestine
16	chr8:105503600-105520800	Weak transcription	Pancreas	Pancrea
17	chr8:105503600-105525800	Weak transcription	HUVEC	blood vessel
18	chr8:105503800-105516200	Weak transcription	Colon Smooth Muscle	Colon
19	chr8:105503800-105525000	Weak transcription	Fetal Stomach	stomach
20	chr8:105503800-105535800	Weak transcription	NHDF-Ad	bronchial
21	chr8:105504400-105512200	Weak transcription	Liver	Liver
22	chr8:105505000-105513200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
23	chr8:105505000-105515800	Weak transcription	A549	lung
24	chr8:105505400-105521800	Weak transcription	Brain Cingulate Gyrus	brain
25	chr8:105505600-105512000	Strong transcription	Fetal Thymus	thymus
26	chr8:105505800-105511800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr8:105506000-105520800	Weak transcription	Brain Angular Gyrus	brain
28	chr8:105506400-105520000	Weak transcription	Right Ventricle	heart
29	chr8:105507000-105511800	Strong transcription	Osteobl	bone
30	chr8:105507400-105513000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr8:105508000-105511800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr8:105508600-105512400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr8:105508800-105511800	Strong transcription	NH-A	brain
34	chr8:105509000-105511800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr8:105509000-105511800	Strong transcription	HSMM	muscle
36	chr8:105509200-105511800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr8:105509200-105511800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr8:105509200-105511800	Strong transcription	Fetal Intestine Large	intestine
39	chr8:105509200-105511800	Strong transcription	Stomach Smooth Muscle	stomach
40	chr8:105509200-105512200	Strong transcription	HUES64 Cell Line	embryonic stem cell
41	chr8:105509200-105512800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr8:105509200-105512800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr8:105509600-105511800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
44	chr8:105509600-105535800	Weak transcription	Aorta	Aorta
45	chr8:105509800-105512000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr8:105510000-105512600	Weak transcription	Fetal Brain Male	brain
47	chr8:105510200-105511800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr8:105510200-105514400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr8:105510200-105516000	Weak transcription	Fetal Muscle Trunk	muscle
50	chr8:105510200-105516200	Weak transcription	Fetal Muscle Leg	muscle

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