Variant report

Variant	rs73295155
Chromosome Location	chr8:105557023-105557024
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:105556248..105558457-chr8:105560436..105562817,2	MCF-7	breast:
2	chr8:105550559..105552900-chr8:105554736..105557129,2	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs35163714	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4427139	1.00[AMR][1000 genomes]
rs57061880	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57149580	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59042845	1.00[AMR][1000 genomes]
rs59429525	1.00[AMR][1000 genomes]
rs60616186	1.00[AMR][1000 genomes]
rs61129183	0.81[AFR][1000 genomes]
rs61148214	1.00[AMR][1000 genomes]
rs61360760	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73293276	0.83[AFR][1000 genomes]
rs73293290	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73293292	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73293298	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73295103	1.00[AMR][1000 genomes]
rs73295113	1.00[AMR][1000 genomes]
rs73295116	1.00[AMR][1000 genomes]
rs73295133	0.81[AFR][1000 genomes]
rs73295148	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73295157	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73295168	1.00[AMR][1000 genomes]
rs73295174	1.00[AMR][1000 genomes]
rs73295188	1.00[AMR][1000 genomes]
rs73297103	1.00[AMR][1000 genomes]
rs73297116	1.00[AMR][1000 genomes]
rs73297130	1.00[AMR][1000 genomes]
rs73297134	1.00[AMR][1000 genomes]
rs73297137	1.00[AMR][1000 genomes]
rs73297149	1.00[AMR][1000 genomes]
rs7812405	0.81[AFR][1000 genomes]
rs7813481	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7832864	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016087	chr8:105228670-105934368	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1026754	chr8:105382508-106030916	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	nsv539709	chr8:105382508-106030916	Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
4	nsv831417	chr8:105455814-105625608	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
5	nsv508522	chr8:105532034-105614403	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:105521800-105568800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:105540000-105562000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr8:105542800-105558600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr8:105542800-105565400	Weak transcription	Left Ventricle	heart
5	chr8:105545200-105565600	Weak transcription	Aorta	Aorta
6	chr8:105551000-105565200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr8:105553800-105559000	Enhancers	K562	blood
8	chr8:105554800-105557200	Enhancers	Primary T cells from cord blood	blood
9	chr8:105555600-105557200	Enhancers	Fetal Thymus	thymus
10	chr8:105555600-105561000	Weak transcription	Primary hematopoietic stem cells	blood
11	chr8:105556400-105557400	Enhancers	Sigmoid Colon	Sigmoid Colon
12	chr8:105556400-105565000	Weak transcription	Dnd41	blood
13	chr8:105556600-105557200	Weak transcription	Thymus	Thymus

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