Variant report

Variant	rs59429525
Chromosome Location	chr8:105630018-105630019
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:105627700..105631260-chr8:105632105..105636974,7	K562	blood:
2	chr8:105598411..105603796-chr8:105629010..105634697,11	K562	blood:
3	chr8:105600016..105603993-chr8:105628798..105633465,5	K562	blood:

Variant related genes	Relation type
ENSG00000253350	Chromatin interaction
ENSG00000147650	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs35163714	1.00[AMR][1000 genomes]
rs4427139	1.00[AMR][1000 genomes]
rs57061880	1.00[AMR][1000 genomes]
rs57149580	1.00[AMR][1000 genomes]
rs59042845	1.00[AMR][1000 genomes]
rs60616186	1.00[AMR][1000 genomes]
rs61148214	1.00[AMR][1000 genomes]
rs61360760	1.00[AMR][1000 genomes]
rs73293290	1.00[AMR][1000 genomes]
rs73293292	1.00[AMR][1000 genomes]
rs73293298	1.00[AMR][1000 genomes]
rs73295103	1.00[AMR][1000 genomes]
rs73295113	1.00[AMR][1000 genomes]
rs73295116	1.00[AMR][1000 genomes]
rs73295148	1.00[AMR][1000 genomes]
rs73295155	1.00[AMR][1000 genomes]
rs73295157	1.00[AMR][1000 genomes]
rs73295168	1.00[AMR][1000 genomes]
rs73295174	1.00[AMR][1000 genomes]
rs73295188	1.00[AMR][1000 genomes]
rs73297103	1.00[AMR][1000 genomes]
rs73297116	1.00[AMR][1000 genomes]
rs73297130	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73297134	1.00[AMR][1000 genomes]
rs73297137	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73297149	1.00[AMR][1000 genomes]
rs7813481	1.00[AMR][1000 genomes]
rs7832864	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016087	chr8:105228670-105934368	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1026754	chr8:105382508-106030916	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	nsv539709	chr8:105382508-106030916	Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
4	esv2422460	chr8:105573376-105746329	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1032476	chr8:105609904-106030916	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv539710	chr8:105609904-106030916	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:105628800-105631200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr8:105629000-105630400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr8:105629000-105632200	Enhancers	Fetal Thymus	thymus
4	chr8:105629200-105630800	Enhancers	Thymus	Thymus
5	chr8:105629400-105630200	Flanking Active TSS	K562	blood
6	chr8:105629400-105630800	Enhancers	Muscle Satellite Cultured Cells	--
7	chr8:105629800-105630200	Flanking Active TSS	GM12878-XiMat	blood
8	chr8:105629800-105630400	Enhancers	Primary T cells from cord blood	blood
9	chr8:105630000-105630400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr8:105630000-105630600	Enhancers	Osteobl	bone
11	chr8:105630000-105630800	Enhancers	NHDF-Ad	bronchial

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