Variant report

Variant	rs35185152
Chromosome Location	chr3:49277521-49277522
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10049462	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10154895	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11552724	0.91[EUR][1000 genomes]
rs11706052	0.81[EUR][1000 genomes]
rs11706189	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11710247	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11713297	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11717524	0.86[ASN][1000 genomes]
rs11718982	0.86[EUR][1000 genomes]
rs11719220	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11720460	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11920267	0.92[ASN][1000 genomes]
rs12629637	0.81[ASN][1000 genomes]
rs12631989	0.86[ASN][1000 genomes]
rs12715434	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13064780	0.92[ASN][1000 genomes]
rs13068038	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13072554	0.80[EUR][1000 genomes]
rs13077498	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13096406	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2117938	0.86[ASN][1000 genomes]
rs2334958	0.91[ASN][1000 genomes]
rs34326553	0.87[EUR][1000 genomes]
rs34343820	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34566463	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34784192	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35060561	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35108630	0.81[EUR][1000 genomes]
rs35218722	0.92[ASN][1000 genomes]
rs35673421	0.89[EUR][1000 genomes]
rs4955432	0.86[ASN][1000 genomes]
rs5030795	0.91[EUR][1000 genomes]
rs55921200	0.81[EUR][1000 genomes]
rs56306491	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs66991555	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs67286839	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67831908	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs71324939	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73084135	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7652746	0.86[ASN][1000 genomes]
rs9311439	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9814987	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9826525	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9828310	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9835439	0.89[EUR][1000 genomes]
rs9837237	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9837625	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9847839	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9850917	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9855123	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9862483	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9870030	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9880088	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9880309	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9990153	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008750	chr3:49208815-49362401	Weak transcription Genic enhancers Strong transcription Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs35185152	WDR6	cis	Whole Blood	GTEx
rs35185152	WDR6	cis	Adipose Subcutaneous	GTEx
rs35185152	WDR6	cis	Artery Tibial	GTEx
rs35185152	WDR6	cis	Skin Sun Exposed Lower leg	GTEx
rs35185152	WDR6	cis	Esophagus Mucosa	GTEx

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:49266200-49292600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr3:49270200-49283000	Weak transcription	Ovary	ovary
3	chr3:49273800-49278400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr3:49274400-49277800	Weak transcription	Osteobl	bone
5	chr3:49274600-49278200	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr3:49275400-49277600	Enhancers	Primary hematopoietic stem cells	blood
7	chr3:49275400-49278000	Strong transcription	Fetal Stomach	stomach
8	chr3:49275400-49278200	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr3:49276000-49282200	Weak transcription	Left Ventricle	heart
10	chr3:49276000-49285000	Weak transcription	Lung	lung
11	chr3:49276200-49278000	Weak transcription	Colon Smooth Muscle	Colon
12	chr3:49276200-49278000	Weak transcription	Fetal Muscle Leg	muscle
13	chr3:49276400-49278000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr3:49276400-49278200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr3:49276400-49278200	Enhancers	Adipose Nuclei	Adipose
16	chr3:49276400-49279400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr3:49276400-49279800	Weak transcription	Fetal Muscle Trunk	muscle
18	chr3:49276400-49282000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr3:49276400-49282200	Weak transcription	GM12878-XiMat	blood
20	chr3:49276400-49286200	Weak transcription	NHDF-Ad	bronchial
21	chr3:49276400-49293400	Weak transcription	NHLF	lung
22	chr3:49276400-49306400	Weak transcription	Spleen	Spleen
23	chr3:49276600-49277600	Enhancers	Monocytes-CD14+_RO01746	blood
24	chr3:49276600-49278400	Enhancers	Primary neutrophils fromperipheralblood	blood
25	chr3:49276600-49282000	Weak transcription	Fetal Heart	heart
26	chr3:49276600-49282000	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr3:49276600-49286200	Weak transcription	Right Ventricle	heart
28	chr3:49276600-49304000	Weak transcription	Stomach Smooth Muscle	stomach
29	chr3:49276800-49282000	Weak transcription	HMEC	breast
30	chr3:49277000-49278000	Weak transcription	K562	blood
31	chr3:49277000-49282000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr3:49277000-49282000	Weak transcription	NHEK	skin
33	chr3:49277000-49282200	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr3:49277000-49286000	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr3:49277200-49277600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr3:49277200-49277800	ZNF genes & repeats	Placenta	Placenta
37	chr3:49277400-49278600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr3:49277400-49292600	Weak transcription	Fetal Intestine Large	intestine

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