Variant report

Variant	rs73084135
Chromosome Location	chr3:49272218-49272219
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10049462	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10154895	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11552724	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11706189	0.92[EUR][1000 genomes]
rs11710247	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11713297	0.92[EUR][1000 genomes]
rs11718982	0.91[EUR][1000 genomes]
rs11719220	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11720460	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12715434	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13068038	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13077498	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13096406	0.92[EUR][1000 genomes]
rs34326553	0.85[EUR][1000 genomes]
rs34343820	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34566463	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34784192	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35060561	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35185152	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35673421	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs5030795	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs55921200	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56306491	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61729488	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs66991555	0.92[EUR][1000 genomes]
rs67286839	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs67831908	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs71324929	1.00[AFR][1000 genomes]
rs71324939	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9311439	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9814987	0.91[EUR][1000 genomes]
rs9826525	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9828310	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9835439	0.86[EUR][1000 genomes]
rs9837237	0.92[EUR][1000 genomes]
rs9837625	0.92[EUR][1000 genomes]
rs9844757	0.84[EUR][1000 genomes]
rs9847839	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9850917	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9855123	0.92[EUR][1000 genomes]
rs9862483	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9870030	0.85[EUR][1000 genomes]
rs9880088	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9880309	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9990153	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008750	chr3:49208815-49362401	Weak transcription Genic enhancers Strong transcription Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs73084135	WDR6	cis	Whole Blood	GTEx
rs73084135	WDR6	cis	Skin Sun Exposed Lower leg	GTEx
rs73084135	WDR6	cis	Adipose Subcutaneous	GTEx
rs73084135	WDR6	cis	Artery Tibial	GTEx
rs73084135	WDR6	cis	Esophagus Mucosa	GTEx

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:49250200-49274000	Weak transcription	Osteobl	bone
2	chr3:49256600-49275800	Weak transcription	NHLF	lung
3	chr3:49266200-49292600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr3:49270200-49283000	Weak transcription	Ovary	ovary
5	chr3:49271200-49272400	ZNF genes & repeats	Fetal Muscle Leg	muscle
6	chr3:49271600-49275400	Weak transcription	Aorta	Aorta
7	chr3:49271600-49275600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr3:49272200-49273800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr3:49272200-49273800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr3:49272200-49275400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr3:49272200-49275400	Weak transcription	Adipose Nuclei	Adipose
12	chr3:49272200-49276000	Weak transcription	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links