Variant report

Variant	rs35189
Chromosome Location	chr16:65034726-65034727
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1040270	0.84[EUR][1000 genomes]
rs1520232	0.84[EUR][1000 genomes]
rs1850966	0.87[EUR][1000 genomes]
rs1874457	0.86[EUR][1000 genomes]
rs2280396	0.86[EUR][1000 genomes]
rs257337	0.82[AFR][1000 genomes]
rs28216	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34553411	0.85[EUR][1000 genomes]
rs35054335	0.81[EUR][1000 genomes]
rs35176	0.87[EUR][1000 genomes]
rs35178	0.82[AFR][1000 genomes]
rs35179	0.84[AFR][1000 genomes]
rs35180	0.82[AFR][1000 genomes]
rs35188	0.82[AFR][1000 genomes]
rs35191	0.87[AFR][1000 genomes]
rs35192	0.87[AFR][1000 genomes]
rs4967885	0.81[EUR][1000 genomes]
rs4967886	0.84[EUR][1000 genomes]
rs59954387	0.82[EUR][1000 genomes]
rs7498801	0.81[EUR][1000 genomes]
rs974782	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948640	chr16:64859061-65112790	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:65000800-65051000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr16:65014200-65040200	Weak transcription	Fetal Intestine Small	intestine
3	chr16:65015000-65035000	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr16:65016200-65040200	Weak transcription	Left Ventricle	heart
5	chr16:65017200-65041800	Weak transcription	Colon Smooth Muscle	Colon
6	chr16:65018000-65035600	Strong transcription	HSMM	muscle
7	chr16:65018800-65035600	Strong transcription	Osteobl	bone
8	chr16:65021200-65038200	Weak transcription	Brain Germinal Matrix	brain
9	chr16:65022000-65041200	Weak transcription	Fetal Heart	heart
10	chr16:65022200-65037200	Weak transcription	Fetal Intestine Large	intestine
11	chr16:65023400-65043200	Strong transcription	Fetal Lung	lung
12	chr16:65023600-65039600	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr16:65024400-65035000	Weak transcription	Brain Substantia Nigra	brain
14	chr16:65025200-65037200	Weak transcription	Spleen	Spleen
15	chr16:65025800-65051400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr16:65026000-65035800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr16:65026000-65037800	Weak transcription	Aorta	Aorta
18	chr16:65026000-65038600	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr16:65026200-65035200	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr16:65026200-65035200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr16:65026600-65035200	Weak transcription	Brain Angular Gyrus	brain
22	chr16:65026800-65035000	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr16:65027000-65036000	Weak transcription	Fetal Brain Female	brain
24	chr16:65027200-65035600	Weak transcription	HUVEC	blood vessel
25	chr16:65029000-65037600	Weak transcription	Fetal Kidney	kidney
26	chr16:65029800-65035600	Strong transcription	NHDF-Ad	bronchial
27	chr16:65029800-65035800	Strong transcription	Fetal Muscle Leg	muscle
28	chr16:65030000-65034800	Strong transcription	Fetal Stomach	stomach
29	chr16:65030000-65035800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr16:65030200-65035200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr16:65030200-65035600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr16:65030400-65035400	Strong transcription	NH-A	brain
33	chr16:65030600-65034800	Strong transcription	HSMMtube	muscle
34	chr16:65032200-65043400	Weak transcription	Fetal Brain Male	brain
35	chr16:65032400-65035800	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr16:65032400-65037800	Weak transcription	HMEC	breast
37	chr16:65032600-65035200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr16:65032600-65035200	Weak transcription	Brain Hippocampus Middle	brain
39	chr16:65032600-65037600	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr16:65032600-65037600	Weak transcription	Lung	lung
41	chr16:65032600-65038400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr16:65032800-65035200	Weak transcription	Brain Anterior Caudate	brain
43	chr16:65032800-65035200	Weak transcription	Ovary	ovary
44	chr16:65032800-65035600	Weak transcription	Brain Cingulate Gyrus	brain
45	chr16:65032800-65035800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr16:65032800-65037200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr16:65032800-65037200	Weak transcription	Fetal Muscle Trunk	muscle
48	chr16:65033000-65035200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
49	chr16:65033000-65037200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr16:65033600-65034800	Strong transcription	Placenta	Placenta

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