The 2.0 version of rSNPBase

Variant report

Variant rs59954387
Chromosome Location chr16:65081315-65081316
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:51 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr16:65039000-65089600 Weak transcription Fetal Intestine Large intestine
2 chr16:65040600-65086000 Weak transcription HMEC breast
3 chr16:65058600-65104400 Weak transcription Placenta Amnion Placenta Amnion
4 chr16:65069800-65105000 Weak transcription HUES6 Cell Line embryonic stem cell
5 chr16:65072800-65088800 Weak transcription Duodenum Smooth Muscle Duodenum
6 chr16:65072800-65096200 Weak transcription Colon Smooth Muscle Colon
7 chr16:65074400-65084800 Strong transcription Fetal Lung lung
8 chr16:65074400-65094000 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
9 chr16:65075000-65082200 Strong transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
10 chr16:65078600-65088200 Strong transcription Breast Myoepithelial Primary Cells Breast
11 chr16:65079000-65081800 Weak transcription Brain Angular Gyrus brain
12 chr16:65079000-65083400 Weak transcription Muscle Satellite Cultured Cells --
13 chr16:65079000-65083600 Weak transcription Brain Cingulate Gyrus brain
14 chr16:65079000-65084400 Weak transcription Sigmoid Colon Sigmoid Colon
15 chr16:65079000-65085200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
16 chr16:65079000-65093000 Weak transcription Cortex derived primary cultured neurospheres brain
17 chr16:65079200-65088000 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
18 chr16:65079200-65088000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
19 chr16:65079400-65082400 Strong transcription Ovary ovary
20 chr16:65079600-65086000 Weak transcription Brain Inferior Temporal Lobe brain
21 chr16:65079600-65087000 Weak transcription Brain Germinal Matrix brain
22 chr16:65079600-65087400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
23 chr16:65079800-65083600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
24 chr16:65079800-65083600 Weak transcription Brain Hippocampus Middle brain
25 chr16:65079800-65088000 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
26 chr16:65079800-65088000 Weak transcription Brain Substantia Nigra brain
27 chr16:65080000-65083200 Weak transcription Fetal Brain Female brain
28 chr16:65080200-65082200 Strong transcription Fetal Stomach stomach
29 chr16:65080200-65083600 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
30 chr16:65080200-65087000 Weak transcription Brain Anterior Caudate brain
31 chr16:65080200-65088000 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
32 chr16:65080200-65088200 Weak transcription ES-I3 Cell Line embryonic stem cell
33 chr16:65080200-65091000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
34 chr16:65080400-65082000 Weak transcription HSMMtube muscle
35 chr16:65080400-65082800 Weak transcription NH-A brain
36 chr16:65080400-65083200 Weak transcription Fetal Adrenal Gland Adrenal Gland
37 chr16:65080400-65083400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
38 chr16:65080400-65083800 Weak transcription Placenta Placenta
39 chr16:65080400-65088000 Strong transcription Osteobl bone
40 chr16:65080400-65088600 Weak transcription Spleen Spleen
41 chr16:65080400-65088800 Weak transcription Fetal Brain Male brain
42 chr16:65080600-65081800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
43 chr16:65080600-65083400 Weak transcription Fetal Kidney kidney
44 chr16:65080600-65083400 Weak transcription Stomach Smooth Muscle stomach
45 chr16:65080600-65083600 Weak transcription Fetal Muscle Trunk muscle
46 chr16:65080600-65086000 Weak transcription Fetal Muscle Leg muscle
47 chr16:65080800-65081600 Weak transcription HSMM muscle
48 chr16:65080800-65081600 Weak transcription NHDF-Ad bronchial
49 chr16:65081000-65083400 Weak transcription Aorta Aorta
50 chr16:65081200-65083400 Weak transcription NHLF lung

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Last update: Aug 31, 2015