Variant report

Variant	rs35215
Chromosome Location	chr16:65015699-65015700
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 141 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:140)

rs_ID	r²[population]
rs1025311	0.99[ASN][1000 genomes]
rs1079008	0.95[ASN][1000 genomes]
rs12445593	0.84[ASN][1000 genomes]
rs12447201	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12597529	0.95[ASN][1000 genomes]
rs12925954	0.99[ASN][1000 genomes]
rs12926007	0.86[ASN][1000 genomes]
rs12935145	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1356823	0.90[EUR][1000 genomes]
rs1520229	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1520230	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1520231	0.93[ASN][1000 genomes]
rs1520234	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1520241	0.95[ASN][1000 genomes]
rs1520243	0.94[ASN][1000 genomes]
rs16942779	0.85[ASN][1000 genomes]
rs16968098	0.85[ASN][1000 genomes]
rs16968101	0.85[ASN][1000 genomes]
rs16968102	0.85[ASN][1000 genomes]
rs1850966	0.96[ASN][1000 genomes]
rs185394	0.84[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs1874457	0.94[ASN][1000 genomes]
rs1874458	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1874459	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1879260	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1896755	0.85[ASN][1000 genomes]
rs1896756	0.85[ASN][1000 genomes]
rs1908723	0.93[ASN][1000 genomes]
rs2115393	0.82[ASN][1000 genomes]
rs2280396	0.96[ASN][1000 genomes]
rs257335	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs257336	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs257337	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs257341	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs257487	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs257490	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs257497	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs257498	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs257499	0.84[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs28216	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs34699531	0.85[ASN][1000 genomes]
rs34893901	0.85[ASN][1000 genomes]
rs35139	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35140	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35142	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35144	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35145	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35146	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35148	0.90[ASN][1000 genomes]
rs35149	0.85[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs35150	0.85[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs35152	0.85[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs35154	0.89[ASN][1000 genomes]
rs35155	0.85[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs35156	0.85[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs35157	0.89[ASN][1000 genomes]
rs35158	0.85[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs35159	0.89[ASN][1000 genomes]
rs35160	0.85[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs35161	0.85[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs35162	0.89[ASN][1000 genomes]
rs35163	0.85[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs35164	0.85[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs35165	0.85[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs35166	0.82[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs35167	0.89[ASN][1000 genomes]
rs35169	0.84[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs35170	0.84[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs35171	0.89[ASN][1000 genomes]
rs35176	0.96[ASN][1000 genomes]
rs35177	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35178	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35179	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35180	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35188	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35191	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35192	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35193	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35195	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35198	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35199	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35200	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35203	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35204	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35205	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35206	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35208	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35209	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35210	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35214	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35216	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35218	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35219	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35224	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35226	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35263777	0.95[ASN][1000 genomes]
rs35557609	0.85[ASN][1000 genomes]
rs35891857	0.85[ASN][1000 genomes]
rs369499	0.84[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs382418	0.84[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs385317	0.85[ASN][1000 genomes]
rs388039	0.89[ASN][1000 genomes]
rs396950	0.89[ASN][1000 genomes]
rs400182	0.89[ASN][1000 genomes]
rs40113	0.85[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs40115	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs40116	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs40510	0.84[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs406925	0.84[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs408330	0.85[ASN][1000 genomes]
rs422274	0.89[ASN][1000 genomes]
rs42863	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs436962	0.86[ASN][1000 genomes]
rs437402	0.84[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs437408	0.84[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs447096	0.89[ASN][1000 genomes]
rs453866	0.84[ASN][1000 genomes]
rs462735	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4967858	0.85[ASN][1000 genomes]
rs4967859	0.85[ASN][1000 genomes]
rs4967860	0.85[ASN][1000 genomes]
rs4967861	0.85[ASN][1000 genomes]
rs4967862	0.85[ASN][1000 genomes]
rs4967866	0.95[ASN][1000 genomes]
rs4967875	0.85[ASN][1000 genomes]
rs4967876	0.85[ASN][1000 genomes]
rs4967882	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59954387	0.92[ASN][1000 genomes]
rs610896	0.85[ASN][1000 genomes]
rs611241	0.85[ASN][1000 genomes]
rs611322	0.85[ASN][1000 genomes]
rs62042237	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7188339	0.83[ASN][1000 genomes]
rs7189660	0.83[ASN][1000 genomes]
rs8048383	0.84[ASN][1000 genomes]
rs878359	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs909003	0.96[ASN][1000 genomes]
rs973200	0.97[ASN][1000 genomes]
rs990639	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9935608	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948640	chr16:64859061-65112790	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:64991400-65032600	Weak transcription	Rectal Smooth Muscle	rectum
2	chr16:64998000-65024800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
3	chr16:64999200-65017800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr16:64999200-65017800	Strong transcription	NH-A	brain
5	chr16:65000800-65051000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr16:65002600-65016000	Weak transcription	Brain Angular Gyrus	brain
7	chr16:65003400-65034000	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr16:65003800-65016000	Weak transcription	Brain Hippocampus Middle	brain
9	chr16:65004200-65017400	Strong transcription	Osteobl	bone
10	chr16:65004800-65027600	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr16:65005200-65016000	Weak transcription	Psoas Muscle	Psoas
12	chr16:65005800-65017200	Weak transcription	Brain Cingulate Gyrus	brain
13	chr16:65006400-65017800	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr16:65006600-65016000	Weak transcription	Placenta	Placenta
15	chr16:65006600-65017400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr16:65006600-65020600	Weak transcription	Brain Germinal Matrix	brain
17	chr16:65006600-65021000	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr16:65006600-65024800	Weak transcription	Spleen	Spleen
19	chr16:65006800-65017400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr16:65007000-65020200	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr16:65007000-65020800	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr16:65008600-65024000	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr16:65009600-65017400	Weak transcription	Fetal Brain Male	brain
24	chr16:65010400-65016000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr16:65011000-65015800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr16:65011200-65016200	Strong transcription	HSMMtube	muscle
27	chr16:65011800-65016000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr16:65012200-65017200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr16:65012200-65017400	Strong transcription	Fetal Stomach	stomach
30	chr16:65013400-65017200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr16:65013400-65018000	Strong transcription	Fetal Lung	lung
32	chr16:65013600-65016200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr16:65013600-65016800	Strong transcription	NHDF-Ad	bronchial
34	chr16:65013800-65016200	Strong transcription	Fetal Muscle Leg	muscle
35	chr16:65013800-65017600	Strong transcription	HSMM	muscle
36	chr16:65014200-65016200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr16:65014200-65016800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr16:65014200-65018000	Enhancers	Fetal Heart	heart
39	chr16:65014200-65040200	Weak transcription	Fetal Intestine Small	intestine
40	chr16:65014400-65016000	Weak transcription	Brain Substantia Nigra	brain
41	chr16:65014400-65016200	Weak transcription	Fetal Kidney	kidney
42	chr16:65014400-65020200	Weak transcription	NHLF	lung
43	chr16:65015000-65015800	Weak transcription	Brain Anterior Caudate	brain
44	chr16:65015000-65016000	Weak transcription	Lung	lung
45	chr16:65015000-65016200	Enhancers	Aorta	Aorta
46	chr16:65015000-65016600	Weak transcription	Fetal Brain Female	brain
47	chr16:65015000-65020600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr16:65015000-65035000	Weak transcription	HUES48 Cell Line	embryonic stem cell
49	chr16:65015200-65016000	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr16:65015200-65016200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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