Variant report

Variant	rs35142
Chromosome Location	chr16:64989421-64989422
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs257341	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs257497	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs257498	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35139	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35140	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35144	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35145	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35146	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35178	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35179	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35180	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35188	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35191	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35192	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35193	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35195	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35198	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35199	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35200	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35203	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35204	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35205	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35206	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35208	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35209	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35210	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35214	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35215	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35216	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35218	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35219	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35224	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35226	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs40115	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs40116	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs42863	0.82[EUR][1000 genomes]
rs462735	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948640	chr16:64859061-65112790	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv984501	chr16:64919797-64993897	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases
3	nsv572901	chr16:64964233-64990187	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:64979000-64998000	Weak transcription	HMEC	breast
2	chr16:64980000-65005200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr16:64980800-64991200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr16:64983000-65003200	Weak transcription	Brain Substantia Nigra	brain
5	chr16:64983200-65004400	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr16:64984400-65002400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr16:64984600-65002200	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr16:64984800-65004600	Weak transcription	Fetal Brain Female	brain
9	chr16:64984800-65005400	Weak transcription	Fetal Muscle Trunk	muscle
10	chr16:64985000-64991800	Weak transcription	Lung	lung
11	chr16:64985000-65002200	Weak transcription	Brain Anterior Caudate	brain
12	chr16:64985000-65002400	Weak transcription	Brain Angular Gyrus	brain
13	chr16:64985000-65004400	Weak transcription	Fetal Intestine Large	intestine
14	chr16:64985000-65005200	Weak transcription	Brain Germinal Matrix	brain
15	chr16:64985000-65005800	Weak transcription	Aorta	Aorta
16	chr16:64985000-65011000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr16:64985200-65004400	Weak transcription	Fetal Brain Male	brain
18	chr16:64985400-64994200	Weak transcription	Fetal Muscle Leg	muscle
19	chr16:64985400-65004200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr16:64985400-65004400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr16:64985400-65005800	Weak transcription	Spleen	Spleen
22	chr16:64985400-65015200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr16:64986000-64991000	Weak transcription	Colon Smooth Muscle	Colon
24	chr16:64986000-64991000	Weak transcription	Rectal Smooth Muscle	rectum
25	chr16:64986200-65003000	Weak transcription	Brain Hippocampus Middle	brain
26	chr16:64986200-65004200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr16:64986400-64991000	Weak transcription	Stomach Smooth Muscle	stomach
28	chr16:64986400-65004000	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr16:64986400-65004200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr16:64986800-64989800	Weak transcription	NH-A	brain
31	chr16:64987000-64990200	Weak transcription	HSMM	muscle
32	chr16:64987000-65002600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr16:64987000-65003200	Weak transcription	NHLF	lung
34	chr16:64987200-64992800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr16:64987400-64990400	Weak transcription	NHDF-Ad	bronchial
36	chr16:64987400-64994400	Weak transcription	HSMMtube	muscle
37	chr16:64987400-64997400	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr16:64988200-64995000	Strong transcription	Fetal Lung	lung
39	chr16:64988600-64989600	Strong transcription	Fetal Stomach	stomach
40	chr16:64988600-64996800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr16:64988600-64999400	Weak transcription	Fetal Kidney	kidney
42	chr16:64988800-64990000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chr16:64988800-64990200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr16:64988800-64990800	Weak transcription	Ovary	ovary
45	chr16:64988800-64994400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr16:64988800-64996600	Strong transcription	Osteobl	bone
47	chr16:64989000-64991000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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