Variant report

Variant	rs35144
Chromosome Location	chr16:64986175-64986176
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 156 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:153)

rs_ID	r²[population]
rs1025311	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1040270	0.87[JPT][hapmap]
rs10500508	1.00[YRI][hapmap]
rs1079008	1.00[CHB][hapmap];0.86[JPT][hapmap];0.89[ASN][1000 genomes]
rs12445593	0.91[ASN][1000 genomes]
rs12447201	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12597529	0.94[ASN][1000 genomes]
rs12925954	0.90[ASN][1000 genomes]
rs12926007	0.94[ASN][1000 genomes]
rs12935145	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1356823	0.88[EUR][1000 genomes]
rs1520229	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1520230	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.85[YRI][hapmap];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1520231	1.00[CHB][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs1520232	0.89[CHB][hapmap];0.81[JPT][hapmap]
rs1520234	1.00[CEU][hapmap];1.00[CHB][hapmap];0.80[JPT][hapmap];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1520236	0.87[JPT][hapmap];1.00[YRI][hapmap]
rs1520241	0.94[ASN][1000 genomes]
rs1520243	1.00[CHB][hapmap];0.93[JPT][hapmap];0.88[ASN][1000 genomes]
rs1532418	0.85[CEU][hapmap];0.86[JPT][hapmap]
rs16942779	0.93[ASN][1000 genomes]
rs16968098	0.93[ASN][1000 genomes]
rs16968101	0.93[ASN][1000 genomes]
rs16968102	0.93[ASN][1000 genomes]
rs16968461	0.83[CEU][hapmap]
rs16968480	0.81[JPT][hapmap];1.00[YRI][hapmap]
rs1850966	0.89[ASN][1000 genomes]
rs185394	0.91[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs1874457	0.88[ASN][1000 genomes]
rs1874458	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1874459	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1879260	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1896755	0.93[ASN][1000 genomes]
rs1896756	0.93[ASN][1000 genomes]
rs1908723	0.87[ASN][1000 genomes]
rs1915117	0.85[CEU][hapmap];0.86[JPT][hapmap]
rs2088285	0.80[JPT][hapmap];1.00[YRI][hapmap]
rs2115393	0.90[ASN][1000 genomes]
rs2280396	1.00[CHB][hapmap];0.93[JPT][hapmap];0.89[ASN][1000 genomes]
rs257335	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs257336	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs257337	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs257341	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs257487	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs257490	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs257497	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs257498	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs257499	0.91[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs28216	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs34699531	0.93[ASN][1000 genomes]
rs34893901	0.91[ASN][1000 genomes]
rs35139	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35140	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35142	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35145	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35146	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35148	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs35149	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs35150	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs35152	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.97[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs35154	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs35155	0.97[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs35156	0.97[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs35157	0.91[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs35158	0.97[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs35159	0.88[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs35160	0.97[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs35161	0.97[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs35162	0.91[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs35163	0.97[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs35164	0.97[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs35165	0.97[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs35166	0.94[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs35167	0.98[ASN][1000 genomes]
rs35169	0.91[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs35170	0.91[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs35171	0.98[ASN][1000 genomes]
rs35176	1.00[CHB][hapmap];0.93[JPT][hapmap];0.89[ASN][1000 genomes]
rs35177	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35178	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35179	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35180	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35188	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35191	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35192	0.90[CEU][hapmap];0.94[CHB][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35193	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35195	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35198	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35199	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35200	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35203	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35204	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35205	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35206	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35208	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35209	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35210	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35214	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35215	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35216	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35218	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35219	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35224	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35226	0.95[CEU][hapmap];0.83[CHB][hapmap];0.93[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35263777	0.89[ASN][1000 genomes]
rs35557609	0.93[ASN][1000 genomes]
rs35891857	0.93[ASN][1000 genomes]
rs369499	0.91[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs382418	0.91[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs385317	0.93[ASN][1000 genomes]
rs388039	0.98[ASN][1000 genomes]
rs396950	0.98[ASN][1000 genomes]
rs400182	0.98[ASN][1000 genomes]
rs40113	0.97[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs40115	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs40116	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs40510	0.91[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs406925	0.91[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs408330	0.93[ASN][1000 genomes]
rs422274	0.98[ASN][1000 genomes]
rs42863	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs436962	0.94[ASN][1000 genomes]
rs437402	0.91[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs437408	0.91[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs447096	0.98[ASN][1000 genomes]
rs453866	0.92[ASN][1000 genomes]
rs462735	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4967858	0.93[ASN][1000 genomes]
rs4967859	0.93[ASN][1000 genomes]
rs4967860	0.93[ASN][1000 genomes]
rs4967861	0.93[ASN][1000 genomes]
rs4967862	0.93[ASN][1000 genomes]
rs4967866	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4967868	1.00[YRI][hapmap]
rs4967875	0.93[ASN][1000 genomes]
rs4967876	0.93[ASN][1000 genomes]
rs4967882	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4967886	0.80[JPT][hapmap]
rs59954387	0.86[ASN][1000 genomes]
rs610896	0.93[ASN][1000 genomes]
rs611241	0.93[ASN][1000 genomes]
rs611322	0.93[ASN][1000 genomes]
rs62042237	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7188339	0.91[ASN][1000 genomes]
rs7189660	0.91[ASN][1000 genomes]
rs7498801	0.80[JPT][hapmap]
rs8048383	0.92[ASN][1000 genomes]
rs878359	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs909003	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs973200	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs974782	0.89[CHB][hapmap];0.87[JPT][hapmap]
rs990639	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9935608	0.93[JPT][hapmap];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948640	chr16:64859061-65112790	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv984501	chr16:64919797-64993897	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases
3	nsv572901	chr16:64964233-64990187	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:64979000-64998000	Weak transcription	HMEC	breast
2	chr16:64980000-65005200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr16:64980800-64991200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr16:64981000-64986400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
5	chr16:64981200-64986400	Strong transcription	Fetal Lung	lung
6	chr16:64983000-65003200	Weak transcription	Brain Substantia Nigra	brain
7	chr16:64983200-65004400	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr16:64984400-64987800	Weak transcription	Fetal Kidney	kidney
9	chr16:64984400-65002400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr16:64984600-65002200	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr16:64984800-64986600	Weak transcription	Brain Cingulate Gyrus	brain
12	chr16:64984800-65004600	Weak transcription	Fetal Brain Female	brain
13	chr16:64984800-65005400	Weak transcription	Fetal Muscle Trunk	muscle
14	chr16:64985000-64986200	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr16:64985000-64986200	Weak transcription	Fetal Intestine Small	intestine
16	chr16:64985000-64991800	Weak transcription	Lung	lung
17	chr16:64985000-65002200	Weak transcription	Brain Anterior Caudate	brain
18	chr16:64985000-65002400	Weak transcription	Brain Angular Gyrus	brain
19	chr16:64985000-65004400	Weak transcription	Fetal Intestine Large	intestine
20	chr16:64985000-65005200	Weak transcription	Brain Germinal Matrix	brain
21	chr16:64985000-65005800	Weak transcription	Aorta	Aorta
22	chr16:64985000-65011000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr16:64985200-65004400	Weak transcription	Fetal Brain Male	brain
24	chr16:64985400-64987200	Weak transcription	Ovary	ovary
25	chr16:64985400-64994200	Weak transcription	Fetal Muscle Leg	muscle
26	chr16:64985400-65004200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr16:64985400-65004400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr16:64985400-65005800	Weak transcription	Spleen	Spleen
29	chr16:64985400-65015200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr16:64985600-64987400	Enhancers	Muscle Satellite Cultured Cells	--
31	chr16:64985600-64987800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr16:64985800-64986200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr16:64985800-64986200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr16:64985800-64986200	Enhancers	NHLF	lung
35	chr16:64985800-64986400	Enhancers	Duodenum Smooth Muscle	Duodenum
36	chr16:64985800-64986400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
37	chr16:64985800-64986800	Enhancers	Adipose Nuclei	Adipose
38	chr16:64985800-64986800	Enhancers	Fetal Stomach	stomach
39	chr16:64985800-64986800	Enhancers	NH-A	brain
40	chr16:64985800-64987000	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr16:64985800-64987400	Enhancers	HSMMtube	muscle
42	chr16:64985800-64987400	Enhancers	NHDF-Ad	bronchial
43	chr16:64986000-64986200	Genic enhancers	Brain Hippocampus Middle	brain
44	chr16:64986000-64986200	Flanking Active TSS	Osteobl	bone
45	chr16:64986000-64986400	Enhancers	Stomach Smooth Muscle	stomach
46	chr16:64986000-64986400	Enhancers	HUVEC	blood vessel
47	chr16:64986000-64987000	Enhancers	HSMM	muscle
48	chr16:64986000-64987400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr16:64986000-64988400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr16:64986000-64991000	Weak transcription	Colon Smooth Muscle	Colon

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