Variant report

Variant	rs1356823
Chromosome Location	chr16:65086581-65086582
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:65077011..65078949-chr16:65084778..65087576,2	K562	blood:

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs1040270	0.82[ASN][1000 genomes]
rs1040271	0.82[ASN][1000 genomes]
rs12447201	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12935138	0.89[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs12935145	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1520229	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1520230	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1520232	0.97[ASN][1000 genomes]
rs1520234	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1520236	0.82[ASN][1000 genomes]
rs1532418	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16968461	0.82[ASN][1000 genomes]
rs1874457	0.81[ASN][1000 genomes]
rs1874458	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1874459	0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1879260	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1915117	0.82[ASN][1000 genomes]
rs2088285	0.89[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs257335	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs257336	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs257337	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs257341	0.89[EUR][1000 genomes]
rs257487	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs257490	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs257497	0.89[EUR][1000 genomes]
rs257498	0.88[EUR][1000 genomes]
rs34553411	0.98[ASN][1000 genomes]
rs35054335	0.83[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs35139	0.89[EUR][1000 genomes]
rs35140	0.89[EUR][1000 genomes]
rs35144	0.88[EUR][1000 genomes]
rs35145	0.88[EUR][1000 genomes]
rs35146	0.87[EUR][1000 genomes]
rs35177	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35178	0.92[EUR][1000 genomes]
rs35179	0.92[EUR][1000 genomes]
rs35180	0.92[EUR][1000 genomes]
rs35188	0.91[EUR][1000 genomes]
rs35191	0.92[EUR][1000 genomes]
rs35192	0.91[EUR][1000 genomes]
rs35193	0.91[EUR][1000 genomes]
rs35195	0.89[EUR][1000 genomes]
rs35198	0.89[EUR][1000 genomes]
rs35199	0.89[EUR][1000 genomes]
rs35200	0.89[EUR][1000 genomes]
rs35203	0.90[EUR][1000 genomes]
rs35204	0.90[EUR][1000 genomes]
rs35205	0.90[EUR][1000 genomes]
rs35206	0.90[EUR][1000 genomes]
rs35208	0.90[EUR][1000 genomes]
rs35209	0.90[EUR][1000 genomes]
rs35210	0.90[EUR][1000 genomes]
rs35214	0.90[EUR][1000 genomes]
rs35215	0.90[EUR][1000 genomes]
rs35216	0.90[EUR][1000 genomes]
rs35218	0.90[EUR][1000 genomes]
rs35219	0.90[EUR][1000 genomes]
rs35224	0.90[EUR][1000 genomes]
rs35226	0.90[EUR][1000 genomes]
rs35709707	0.81[ASN][1000 genomes]
rs40115	0.89[EUR][1000 genomes]
rs40116	0.90[EUR][1000 genomes]
rs42863	0.92[EUR][1000 genomes]
rs4393595	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs462735	0.89[EUR][1000 genomes]
rs4967882	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4967884	0.81[AFR][1000 genomes]
rs4967885	0.82[ASN][1000 genomes]
rs4967886	0.82[ASN][1000 genomes]
rs62042237	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7204729	0.86[ASN][1000 genomes]
rs7498801	0.89[ASN][1000 genomes]
rs8048351	0.82[ASN][1000 genomes]
rs878359	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs974782	0.98[ASN][1000 genomes]
rs990639	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948640	chr16:64859061-65112790	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv833260	chr16:65050647-65218759	Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1831	chr16:65071976-65106105	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:65039000-65089600	Weak transcription	Fetal Intestine Large	intestine
2	chr16:65058600-65104400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr16:65069800-65105000	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr16:65072800-65088800	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr16:65072800-65096200	Weak transcription	Colon Smooth Muscle	Colon
6	chr16:65074400-65094000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr16:65078600-65088200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
8	chr16:65079000-65093000	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr16:65079200-65088000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr16:65079200-65088000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr16:65079600-65087000	Weak transcription	Brain Germinal Matrix	brain
12	chr16:65079600-65087400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr16:65079800-65088000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr16:65079800-65088000	Weak transcription	Brain Substantia Nigra	brain
15	chr16:65080200-65087000	Weak transcription	Brain Anterior Caudate	brain
16	chr16:65080200-65088000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr16:65080200-65088200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr16:65080200-65091000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr16:65080400-65088000	Strong transcription	Osteobl	bone
20	chr16:65080400-65088600	Weak transcription	Spleen	Spleen
21	chr16:65080400-65088800	Weak transcription	Fetal Brain Male	brain
22	chr16:65081200-65088400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr16:65081600-65087800	Strong transcription	NHDF-Ad	bronchial
24	chr16:65081800-65094800	Weak transcription	Lung	lung
25	chr16:65082000-65088000	Strong transcription	HSMMtube	muscle
26	chr16:65082200-65086600	Weak transcription	Brain Angular Gyrus	brain
27	chr16:65082800-65093200	Strong transcription	NH-A	brain
28	chr16:65083400-65087800	Strong transcription	Aorta	Aorta
29	chr16:65083400-65087800	Strong transcription	Stomach Smooth Muscle	stomach
30	chr16:65083400-65087800	Strong transcription	NHLF	lung
31	chr16:65083400-65088000	Strong transcription	HSMM	muscle
32	chr16:65083400-65088200	Strong transcription	Ovary	ovary
33	chr16:65083400-65088400	Strong transcription	Fetal Kidney	kidney
34	chr16:65083600-65087400	Strong transcription	Fetal Muscle Trunk	muscle
35	chr16:65083600-65087800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr16:65083600-65088200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr16:65083800-65087800	Strong transcription	Fetal Stomach	stomach
38	chr16:65083800-65100000	Weak transcription	Rectal Smooth Muscle	rectum
39	chr16:65084200-65088200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr16:65084600-65087800	Strong transcription	Muscle Satellite Cultured Cells	--
41	chr16:65085000-65095800	Weak transcription	Fetal Brain Female	brain
42	chr16:65085200-65088000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr16:65085200-65088200	Strong transcription	Fetal Lung	lung
44	chr16:65085400-65089000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr16:65085600-65086800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr16:65085800-65087400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr16:65085800-65087800	Strong transcription	Brain Hippocampus Middle	brain
48	chr16:65086000-65087400	Strong transcription	Brain Inferior Temporal Lobe	brain
49	chr16:65086000-65087800	Strong transcription	Fetal Muscle Leg	muscle
50	chr16:65086000-65087800	Strong transcription	HMEC	breast

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