The 2.0 version of rSNPBase

Variant report

Variant rs12925954
Chromosome Location chr16:65013130-65013131
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:57 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr16:64985400-65015200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
2 chr16:64991400-65032600 Weak transcription Rectal Smooth Muscle rectum
3 chr16:64998000-65024800 Strong transcription Breast Myoepithelial Primary Cells Breast
4 chr16:64998400-65014800 Weak transcription HUVEC blood vessel
5 chr16:64999200-65017800 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
6 chr16:64999200-65017800 Strong transcription NH-A brain
7 chr16:65000800-65051000 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
8 chr16:65002400-65015200 Weak transcription Left Ventricle heart
9 chr16:65002600-65016000 Weak transcription Brain Angular Gyrus brain
10 chr16:65003400-65034000 Weak transcription Skeletal Muscle Female skeletal muscle
11 chr16:65003800-65016000 Weak transcription Brain Hippocampus Middle brain
12 chr16:65004200-65017400 Strong transcription Osteobl bone
13 chr16:65004600-65013400 Weak transcription Right Ventricle heart
14 chr16:65004800-65013400 Weak transcription Brain Substantia Nigra brain
15 chr16:65004800-65027600 Weak transcription Sigmoid Colon Sigmoid Colon
16 chr16:65005200-65016000 Weak transcription Psoas Muscle Psoas
17 chr16:65005400-65014200 Weak transcription Fetal Heart heart
18 chr16:65005800-65017200 Weak transcription Brain Cingulate Gyrus brain
19 chr16:65006200-65013600 Weak transcription Fetal Brain Female brain
20 chr16:65006400-65017800 Weak transcription HUES64 Cell Line embryonic stem cell
21 chr16:65006600-65013400 Weak transcription Fetal Muscle Trunk muscle
22 chr16:65006600-65013600 Weak transcription Fetal Adrenal Gland Adrenal Gland
23 chr16:65006600-65014200 Weak transcription Brain Inferior Temporal Lobe brain
24 chr16:65006600-65014200 Weak transcription Ovary ovary
25 chr16:65006600-65015000 Weak transcription Aorta Aorta
26 chr16:65006600-65015600 Weak transcription HMEC breast
27 chr16:65006600-65016000 Weak transcription Placenta Placenta
28 chr16:65006600-65017400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
29 chr16:65006600-65020600 Weak transcription Brain Germinal Matrix brain
30 chr16:65006600-65021000 Weak transcription Placenta Amnion Placenta Amnion
31 chr16:65006600-65024800 Weak transcription Spleen Spleen
32 chr16:65006800-65013600 Weak transcription Fetal Kidney kidney
33 chr16:65006800-65013600 Weak transcription Stomach Smooth Muscle stomach
34 chr16:65006800-65014600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
35 chr16:65006800-65017400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
36 chr16:65007000-65014200 Weak transcription Fetal Intestine Large intestine
37 chr16:65007000-65020200 Weak transcription HUES6 Cell Line embryonic stem cell
38 chr16:65007000-65020800 Weak transcription Duodenum Smooth Muscle Duodenum
39 chr16:65008400-65013600 Weak transcription NHLF lung
40 chr16:65008600-65024000 Weak transcription Cortex derived primary cultured neurospheres brain
41 chr16:65009400-65013600 Weak transcription Brain Anterior Caudate brain
42 chr16:65009600-65017400 Weak transcription Fetal Brain Male brain
43 chr16:65010400-65016000 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
44 chr16:65010600-65015400 Weak transcription Muscle Satellite Cultured Cells --
45 chr16:65011000-65015800 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
46 chr16:65011200-65013400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
47 chr16:65011200-65014200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
48 chr16:65011200-65016200 Strong transcription HSMMtube muscle
49 chr16:65011400-65014200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
50 chr16:65011800-65013800 Weak transcription Fetal Muscle Leg muscle

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Last update: Aug 31, 2015