Variant report

Variant	rs4967868
Chromosome Location	chr16:65133066-65133067
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs1040270	0.90[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1040271	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10500508	0.95[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1079008	0.91[JPT][hapmap]
rs12935138	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1520229	0.83[JPT][hapmap]
rs1520230	0.84[JPT][hapmap];0.82[YRI][hapmap]
rs1520231	0.91[JPT][hapmap]
rs1520232	0.81[CEU][hapmap];1.00[JPT][hapmap]
rs1520234	0.92[JPT][hapmap]
rs1520236	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1520243	0.84[JPT][hapmap]
rs1532418	1.00[CHB][hapmap];0.91[JPT][hapmap];0.93[ASN][1000 genomes]
rs16968461	1.00[CHB][hapmap];0.83[JPT][hapmap];0.96[ASN][1000 genomes]
rs16968480	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1915117	1.00[CHB][hapmap];0.91[JPT][hapmap];0.96[ASN][1000 genomes]
rs2088285	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2132543	0.97[ASN][1000 genomes]
rs2280396	0.83[JPT][hapmap]
rs257335	0.84[JPT][hapmap]
rs257336	0.84[JPT][hapmap]
rs257337	0.84[JPT][hapmap]
rs257341	1.00[YRI][hapmap]
rs257490	0.83[JPT][hapmap]
rs257497	1.00[YRI][hapmap]
rs257498	1.00[YRI][hapmap]
rs28216	0.84[CEU][hapmap];1.00[YRI][hapmap]
rs35054335	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35140	1.00[YRI][hapmap]
rs35144	1.00[YRI][hapmap]
rs35146	1.00[YRI][hapmap]
rs35148	1.00[YRI][hapmap]
rs35149	1.00[YRI][hapmap]
rs35150	1.00[YRI][hapmap]
rs35152	0.82[YRI][hapmap]
rs35154	1.00[YRI][hapmap]
rs35176	0.83[JPT][hapmap]
rs35200	1.00[YRI][hapmap]
rs35203	0.82[JPT][hapmap];1.00[YRI][hapmap]
rs35204	1.00[YRI][hapmap]
rs35208	1.00[YRI][hapmap]
rs35209	1.00[YRI][hapmap]
rs35214	1.00[YRI][hapmap]
rs35216	1.00[YRI][hapmap]
rs35219	1.00[YRI][hapmap]
rs35709707	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs40115	1.00[YRI][hapmap]
rs40116	1.00[YRI][hapmap]
rs4393595	0.93[ASN][1000 genomes]
rs4967882	0.84[JPT][hapmap]
rs4967885	0.89[ASN][1000 genomes]
rs4967886	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7204729	0.81[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs7498801	0.91[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs8048351	0.90[ASN][1000 genomes]
rs878359	0.83[JPT][hapmap]
rs974782	0.81[CEU][hapmap];0.92[JPT][hapmap]
rs9935608	0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833260	chr16:65050647-65218759	Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:65095800-65152000	Weak transcription	Fetal Intestine Large	intestine
2	chr16:65106200-65147400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr16:65106400-65147600	Weak transcription	Fetal Muscle Trunk	muscle
4	chr16:65106800-65151800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr16:65113200-65141600	Weak transcription	Stomach Smooth Muscle	stomach
6	chr16:65113600-65136400	Weak transcription	Spleen	Spleen
7	chr16:65113600-65138800	Weak transcription	Fetal Muscle Leg	muscle
8	chr16:65113800-65140400	Weak transcription	Fetal Brain Male	brain
9	chr16:65115800-65147600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr16:65116400-65136800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr16:65117400-65141000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr16:65118400-65138400	Weak transcription	Fetal Stomach	stomach
13	chr16:65120800-65148600	Weak transcription	Aorta	Aorta
14	chr16:65122200-65147400	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr16:65124400-65139200	Weak transcription	NHLF	lung
16	chr16:65125200-65133200	Weak transcription	NHDF-Ad	bronchial
17	chr16:65126600-65140800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr16:65129200-65133400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr16:65129200-65133600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr16:65129200-65148400	Weak transcription	Fetal Kidney	kidney
21	chr16:65129600-65133200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr16:65130200-65147400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr16:65130600-65133200	Weak transcription	HMEC	breast
24	chr16:65130600-65134000	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr16:65131200-65134000	Enhancers	Ovary	ovary
26	chr16:65131600-65133200	Weak transcription	NH-A	brain
27	chr16:65132200-65134000	Genic enhancers	HSMM	muscle
28	chr16:65132200-65134200	Genic enhancers	Osteobl	bone
29	chr16:65132400-65133600	Enhancers	Muscle Satellite Cultured Cells	--
30	chr16:65132400-65133800	Enhancers	HSMMtube	muscle
31	chr16:65132600-65134200	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr16:65132600-65134200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr16:65132600-65137000	Strong transcription	Fetal Lung	lung
34	chr16:65132600-65139400	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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