Variant report

Variant	rs35193894
Chromosome Location	chr18:8981191-8981192
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr18:8615811..8618362-chr18:8979666..8982599,2	K562	blood:
2	chr18:8981074..8983974-chr18:9054070..9056499,2	MCF-7	breast:
3	chr18:8979245..8982600-chr18:8987803..8990531,3	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10502389	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12966593	0.80[EUR][1000 genomes]
rs34086977	0.96[EUR][1000 genomes]
rs35496144	0.83[EUR][1000 genomes]
rs35927729	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35932057	0.86[EUR][1000 genomes]
rs35974770	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8099128	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064883	chr18:8709670-9133224	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv870110	chr18:8958418-9075363	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:8961800-8982400	Weak transcription	NHDF-Ad	bronchial
2	chr18:8963800-8982200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr18:8977600-8981200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr18:8978200-8981400	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr18:8978200-8983000	Enhancers	Colon Smooth Muscle	Colon
6	chr18:8978800-8981400	Enhancers	HepG2	liver
7	chr18:8978800-8983200	Enhancers	A549	lung
8	chr18:8978800-8984600	Enhancers	Rectal Smooth Muscle	rectum
9	chr18:8979200-8982200	Weak transcription	Fetal Thymus	thymus
10	chr18:8979400-8982000	Weak transcription	Primary B cells from cord blood	blood
11	chr18:8979600-8981600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr18:8979600-8982000	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr18:8980000-8981400	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr18:8980000-8981400	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr18:8980000-8981400	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr18:8980000-8981800	Weak transcription	Primary B cells from peripheral blood	blood
17	chr18:8980000-8982000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr18:8980200-8981400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr18:8980200-8981400	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr18:8980400-8981400	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr18:8980400-8981600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr18:8980400-8981600	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr18:8980600-8981200	Enhancers	H9 Cell Line	embryonic stem cell
24	chr18:8980600-8981400	Enhancers	H1 Cell Line	embryonic stem cell
25	chr18:8980600-8981400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr18:8980600-8981400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr18:8980600-8981400	Enhancers	Cortex derived primary cultured neurospheres	brain
28	chr18:8980600-8981400	Enhancers	K562	blood
29	chr18:8980600-8983600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr18:8980800-8981200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr18:8980800-8981200	Enhancers	Placenta	Placenta
32	chr18:8980800-8981800	Enhancers	Stomach Smooth Muscle	stomach
33	chr18:8980800-8982400	Weak transcription	NH-A	brain
34	chr18:8980800-8983400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr18:8981000-8981200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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