Variant report

Variant	rs35496144
Chromosome Location	chr18:8976485-8976486
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10502389	0.91[EUR][1000 genomes]
rs35193894	0.83[EUR][1000 genomes]
rs35927729	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35974770	0.91[EUR][1000 genomes]
rs8099128	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064883	chr18:8709670-9133224	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv870110	chr18:8958418-9075363	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:8961800-8982400	Weak transcription	NHDF-Ad	bronchial
2	chr18:8963800-8982200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr18:8972400-8976800	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr18:8972400-8978800	Weak transcription	K562	blood
5	chr18:8974400-8976600	Active TSS	Rectal Smooth Muscle	rectum
6	chr18:8975800-8976600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr18:8975800-8976600	Active TSS	Colon Smooth Muscle	Colon
8	chr18:8976400-8976600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr18:8976400-8977200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr18:8976400-8977800	Enhancers	H1 Cell Line	embryonic stem cell
11	chr18:8976400-8978600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links