Variant report

Variant	rs35927729
Chromosome Location	chr18:8978277-8978278
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:8974262..8976053-chr18:8976303..8978717,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10502389	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12965683	0.84[AMR][1000 genomes]
rs34086977	0.84[EUR][1000 genomes]
rs35193894	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35496144	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35974770	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs8099128	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064883	chr18:8709670-9133224	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv870110	chr18:8958418-9075363	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:8961800-8982400	Weak transcription	NHDF-Ad	bronchial
2	chr18:8963800-8982200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr18:8972400-8978800	Weak transcription	K562	blood
4	chr18:8976400-8978600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr18:8976600-8978600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr18:8976600-8980800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr18:8977000-8979000	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr18:8977200-8979600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr18:8977200-8980000	Enhancers	Primary B cells from peripheral blood	blood
10	chr18:8977200-8980200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr18:8977200-8980600	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr18:8977600-8979400	Enhancers	Primary B cells from cord blood	blood
13	chr18:8977600-8981200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr18:8977800-8978400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr18:8977800-8978800	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr18:8977800-8979200	Enhancers	Fetal Thymus	thymus
17	chr18:8977800-8980600	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr18:8978000-8980000	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr18:8978000-8980400	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr18:8978200-8978800	Active TSS	Rectal Smooth Muscle	rectum
21	chr18:8978200-8979400	Enhancers	Stomach Smooth Muscle	stomach
22	chr18:8978200-8981400	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr18:8978200-8983000	Enhancers	Colon Smooth Muscle	Colon

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