Variant report

Variant	rs35196850
Chromosome Location	chr1:169876101-169876102
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:169860935..169863492-chr1:169873415..169876393,2	MCF-7	breast:
2	chr1:169866713..169870686-chr1:169874035..169877977,4	K562	blood:
3	chr1:169875733..169878335-chr1:170499104..170501946,2	MCF-7	breast:
4	chr1:169867701..169870686-chr1:169875443..169877977,2	K562	blood:

Variant related genes	Relation type
ENSG00000231407	Chromatin interaction
ENSG00000000457	Chromatin interaction
ENSG00000120370	Chromatin interaction

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10489175	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10800488	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11577641	0.91[EUR][1000 genomes]
rs11578817	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11579102	0.94[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs11579709	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11581959	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11582552	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11584208	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11585093	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11589659	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11589671	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11590604	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1572551	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16828209	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs16862683	0.82[EUR][1000 genomes]
rs16862705	0.83[EUR][1000 genomes]
rs16862870	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs16862874	0.80[EUR][1000 genomes]
rs2420510	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2420511	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34657513	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3753312	0.94[EUR][1000 genomes]
rs3766138	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3766139	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3766145	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3766146	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3766150	0.86[EUR][1000 genomes]
rs3817859	0.83[EUR][1000 genomes]
rs4656201	0.89[EUR][1000 genomes]
rs4656720	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4656722	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4656723	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4656726	0.86[EUR][1000 genomes]
rs4656727	0.85[EUR][1000 genomes]
rs55806711	0.94[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs57805301	0.83[EUR][1000 genomes]
rs58111285	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs60191157	0.83[EUR][1000 genomes]
rs60315765	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61806076	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61806098	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61807812	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61807813	0.82[EUR][1000 genomes]
rs61807814	0.81[AMR][1000 genomes]
rs61807817	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61807818	0.83[EUR][1000 genomes]
rs61807835	0.87[EUR][1000 genomes]
rs61807840	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61825319	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6685211	0.83[EUR][1000 genomes]
rs73026253	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3451367	chr1:169630075-169976964	Strong transcription Flanking Active TSS Genic enhancers Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	esv1814601	chr1:169782006-169885186	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	esv1821503	chr1:169782006-169885186	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	esv1847722	chr1:169782006-169885186	Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
5	esv2757760	chr1:169782006-169885186	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
6	esv2758976	chr1:169782006-169885186	Strong transcription Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
7	nsv428268	chr1:169782006-169885186	Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
8	esv1845220	chr1:169782006-169933886	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169872800-169877600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr1:169872800-169878000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr1:169872800-169887800	Weak transcription	Primary T cells from cord blood	blood
4	chr1:169873200-169877400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr1:169873200-169877600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr1:169873200-169877600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr1:169873200-169877600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr1:169873400-169877600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr1:169875800-169889800	Weak transcription	Fetal Brain Female	brain
10	chr1:169876000-169876200	Enhancers	Aorta	Aorta
11	chr1:169876000-169876200	Enhancers	NHDF-Ad	bronchial
12	chr1:169876000-169876400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr1:169876000-169876600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr1:169876000-169876600	Enhancers	Muscle Satellite Cultured Cells	--

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