Variant report

Variant	rs35236325
Chromosome Location	chr3:99155929-99155930
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11914571	0.80[EUR][1000 genomes]
rs11915304	0.87[EUR][1000 genomes]
rs11918189	0.80[EUR][1000 genomes]
rs11920092	0.80[EUR][1000 genomes]
rs12636295	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13075415	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13076783	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13080632	0.87[EUR][1000 genomes]
rs13089029	0.93[EUR][1000 genomes]
rs16841136	0.80[EUR][1000 genomes]
rs2464143	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2670327	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2670334	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2700658	0.88[ASN][1000 genomes]
rs2700660	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34036931	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34842877	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35069145	0.93[EUR][1000 genomes]
rs35422279	0.80[EUR][1000 genomes]
rs36015505	0.84[EUR][1000 genomes]
rs4339135	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4422347	0.90[EUR][1000 genomes]
rs4580592	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4616686	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58712684	0.97[EUR][1000 genomes]
rs61509669	0.80[EUR][1000 genomes]
rs71313539	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72940106	0.87[EUR][1000 genomes]
rs7628820	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9823862	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007140	chr3:98421229-99202458	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv536663	chr3:98421229-99202458	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv1007486	chr3:98597738-99249081	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv530026	chr3:98837320-99340537	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv877216	chr3:99065296-99161022	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99153400-99158600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr3:99154800-99156200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links